Factsheet for TraesCS3B01G054300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	93.92	92.79
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	88.15	87.35
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	87.84	87.31
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	86.02	87.08
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	82.98	83.23
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	72.64	70.92
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	69.91	69.28
HORVU3Hr1G005290.2	Barley	plastid	78.42	68.98
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	62.92	63.69
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	59.27	62.7
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	54.71	61.43
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	54.71	61.43
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	59.88	61.37
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	60.18	60.55
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	60.18	60.55
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	60.18	60.55
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	59.57	59.94
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	59.57	59.94
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	59.57	59.94
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	58.36	58.01
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	55.02	56.39
TraesCS7B01G030300.1	Wheat	plastid	46.2	47.2
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	41.03	43.55
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	34.04	40.58
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	33.43	39.86
EES00397	Sorghum	plastid	38.6	39.44
TraesCS7B01G147600.1	Wheat	plastid	26.44	38.16
TraesCS3B01G053300.1	Wheat	plastid	23.4	37.75
Os01t0122701-00	Rice	plastid	11.55	37.62
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	31.91	34.09
TraesCS3B01G026900.1	Wheat	nucleus	33.13	34.06
TraesCS7B01G040200.1	Wheat	cytosol	31.91	33.23
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	31.31	32.8
TraesCS3B01G054000.1	Wheat	cytosol	29.18	30.67
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	31.31	28.85
TraesCS3B01G028000.1	Wheat	mitochondrion	22.49	28.03
TraesCS3B01G018200.1	Wheat	plastid	34.35	25.86
TraesCS7B01G197600.1	Wheat	cytosol	18.84	24.41
TraesCS3B01G572900.1	Wheat	cytosol	26.75	24.31
TraesCS3B01G116800.1	Wheat	cytosol	24.32	24.24
TraesCS3B01G573000.1	Wheat	cytosol	22.49	23.2
TraesCS6B01G375600.1	Wheat	plastid	23.1	21.9
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	29.18	19.55
TraesCS6B01G375700.1	Wheat	plastid	20.67	19.21
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	33.74	16.32
TraesCS3B01G079200.1	Wheat	cytosol, plastid	29.18	16.16
TraesCS1B01G344300.1	Wheat	nucleus	34.65	13.38

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G054300	EnsemblPlants:TraesCS3B01G054300.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:28081406..28082494

Molecular Weight (calculated)

33800.3 Da

IEP (calculated)

6.756

GRAVY (calculated)

0.074

Length

329 amino acids

Sequence
(BLAST)

001: MQGAGAAEGR SRGSPSTMDQ ADESAKKARL DLPDAHSVKQ ELVAHDAAAG AGAIVAVAEH SPRAELAVKI DMCVFHCPLC ALPFKPPVFQ CKGGHLACGG
101: CAAQQPSGQC GACADGCGFF DPCPALDAVV SSTRVECPNA GCHRYVTYHE ADEHRSACAH APCRCTEHGC AFVSAAPDLA GHLSAAHSVP VRAIRYGKVS
201: RLQVPVSTPR QLLVGDDDGR VFVLTVGALG SAATAVSVVC ARGSAATRPR FTCKMWVNLT ANGGKADTVL VEMQMRSSTS PGAVVAAGEP TFLAVPPMYL
301: VPGADGGDGA AAMEVPLSVR IDQIAPWSD

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.