Factsheet for TraesCS3B01G018100.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	95.29	95.43
TraesCS3A01G028000.1	Wheat	plasma membrane	87.21	91.37
TraesCS3B01G018200.1	Wheat	plastid	37.21	57.89
TraesCS7B01G147600.1	Wheat	plastid	15.15	45.18
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	18.24	40.0
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	17.79	38.91
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	15.74	38.77
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	15.59	38.41
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	16.47	38.23
TraesCS7B01G030300.1	Wheat	plastid	17.5	36.96
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	17.65	36.92
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	17.79	35.91
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	17.5	35.84
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	15.29	35.49
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	16.62	35.2
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	16.76	34.86
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	16.47	34.25
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	16.47	34.25
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	16.47	34.25
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	16.47	34.25
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	16.47	33.84
TraesCS3B01G053300.1	Wheat	plastid	10.15	33.82
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	16.32	33.74
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	16.32	33.33
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	15.88	33.03
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	15.29	32.4
Os01t0122701-00	Rice	plastid	4.56	30.69
EES00397	Sorghum	plastid	14.41	30.43
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	13.38	29.55
TraesCS7B01G040200.1	Wheat	cytosol	13.68	29.43
TraesCS3B01G054000.1	Wheat	cytosol	13.24	28.75
TraesCS3B01G026900.1	Wheat	nucleus	13.09	27.81
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	12.79	27.71
TraesCS3B01G028000.1	Wheat	mitochondrion	10.44	26.89
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	12.35	23.53
TraesCS6B01G375600.1	Wheat	plastid	11.91	23.34
TraesCS3B01G573000.1	Wheat	cytosol	10.88	23.2
TraesCS3B01G116800.1	Wheat	cytosol	11.18	23.03
TraesCS3B01G572900.1	Wheat	cytosol	12.21	22.93
TraesCS7B01G197600.1	Wheat	cytosol	8.38	22.44
TraesCS6B01G375700.1	Wheat	plastid	10.59	20.34
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	13.68	18.94
TraesCS1B01G344300.1	Wheat	nucleus	23.53	18.78
TraesCS3B01G079200.1	Wheat	cytosol, plastid	11.62	13.3

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46
InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G018100	EnsemblPlants:TraesCS3B01G018100.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:7482215..7489109

Molecular Weight (calculated)

74359.6 Da

IEP (calculated)

6.336

GRAVY (calculated)

-0.038

Length

680 amino acids

Sequence
(BLAST)

001: MDTYSNLPIG SSGRDKNNVH YRCSPHQLPP FMKCLSDKQI GFVRKIGFES ILSMQDFKMD KDLTLWLVDK FNCDTEELEF DEGISIPVRP LVKFVLGIPS
101: GPIKVIEGLH VDDALYEQYT WDTRGKKAKE VAEEMCSITE EEPFCIAFMM AILAIYLAPN TSVSVSRSFL GAARQVGNLK QMDWCNLVAD CLFKGIKDYK
201: QSDRLCVHVK GSVHILSVIF IDLAKHPTLI VPDGFPRLSV VTTEMGCFTS KWVVAHPFGS FVPVRCLEES VYAPVLNNMP NGNTVEGVKC SDSDSNTDAL
301: ADQFAITDTD QNNNKHPILA ELGNARTTHN TSSSPIVEHV VLDTPARASV AAPSSLTEHI IFPTSGEQLQ SAGPSDEPHS AQIMGSVQVP PDTTVERRRG
401: LLLTMEKDDR STKKARVELS GSGQVKQAEE VTIKMDMSLL NCSVCSRPIK PPVFECNAGH LACYKCLIGL PYKLCQTCEH SSGFGHIRSL DAIVSSLTVK
501: CHHDGCGSYV PYYELDDHQS VCPHVPCFCT ELGCGFVGAP QALLGHLIAL HAMPVHKVHY GQVHQLRLSV TRPRCLLHGQ GDDSVFLLVM GVFGVVSVVC
601: IRAEASSWPQ YAVKLQANGP PPPSSVEGSI LLAMKPVTSS TRPGEVAVEE LPSFLMVPPT YLVGSGASKE VSLDVRIDKM

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.