Factsheet for TraesCS3B01G055200.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	mitochondrion, nucleus, plasma membrane, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G207000.1	Wheat	extracellular, plastid	40.27	93.65
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	98.63	88.38
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	94.88	85.02
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	94.2	84.4
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	93.86	84.1
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	83.62	83.62
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	86.35	82.68
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	88.4	79.2
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	86.69	79.13
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	84.64	75.84
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	81.23	74.14
TraesCSU01G206900.1	Wheat	cytosol	39.93	73.58
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	80.55	72.39
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	76.11	68.83
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	75.77	66.87
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	76.11	66.17
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	69.97	61.93
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	64.51	57.27
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	61.77	55.69
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	58.36	54.98
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	61.43	54.71
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	61.77	54.35
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	44.03	41.61
TraesCS7B01G030300.1	Wheat	plastid	43.0	39.13
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	36.86	39.13
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	36.86	39.13
Os01t0122701-00	Rice	plastid	12.97	37.62
TraesCS7B01G147600.1	Wheat	plastid	28.67	36.84
EES00397	Sorghum	plastid	34.13	31.06
TraesCS3B01G053300.1	Wheat	plastid	21.5	30.88
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	31.74	30.19
TraesCS3B01G026900.1	Wheat	nucleus	31.74	29.06
TraesCS7B01G040200.1	Wheat	cytosol	31.06	28.8
TraesCS3B01G054000.1	Wheat	cytosol	30.72	28.75
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	29.69	27.71
TraesCS3B01G028000.1	Wheat	mitochondrion	24.91	27.65
TraesCS3B01G018200.1	Wheat	plastid	37.2	24.94
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	30.03	24.65
TraesCS3B01G573000.1	Wheat	cytosol	25.94	23.82
TraesCS3B01G572900.1	Wheat	cytosol	29.01	23.48
TraesCS7B01G197600.1	Wheat	cytosol	18.77	21.65
TraesCS3B01G116800.1	Wheat	cytosol	22.87	20.3
TraesCS6B01G375600.1	Wheat	plastid	23.89	20.17
TraesCS6B01G375700.1	Wheat	plastid	21.5	17.8
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	27.99	16.7
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	38.23	16.47
TraesCS3B01G079200.1	Wheat	cytosol, plastid	27.3	13.47
TraesCS1B01G344300.1	Wheat	nucleus	38.91	13.38

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G055200	EnsemblPlants:TraesCS3B01G055200.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:28529086..28530072

Molecular Weight (calculated)

31157.2 Da

IEP (calculated)

7.933

GRAVY (calculated)

0.251

Length

293 amino acids

Sequence
(BLAST)

001: MKQEAACEGD GGAIVGAAYI QRVELAVRID KQMLHCPLCT HPFKPPVFQC KAGHPACSGC VALLPFRQCK ACVDGGGFFD PCPTLDTLVS STRIGCPNVG
101: CQWYVTYHEV TEQQKVCPYA PCRCTEPGCG YVGAPQALAG HLRTVHLVPV RAVQYGKVSK LQLSVSTMRL VLLGDDNCVF LMTVGALGAG ITAVSVVCAR
201: ARAVTRPRFT CKMWVNLETP PAAVANCGKE DMVLVDMHIR SSSSPGAVVA AGEPTFLTVP PMYLVPAAGD GASMEVPLHI RINKLSPWSD ALV

Best Arabidopsis Sequence Match ( AT1G66630.1 )
(BLAST)

001: MENITNNSER SLDRPKRQRP VSMENVGGTA SGSEVARSAT LLELDLLDCP ICYHKLGAPI YQCDNGHIAC SSCCKKVKYK CPYCSLRIGF FRSRILEKIV
101: EAVVVSCPNA KYGCTEKIPY DNESESAHER VCEFTLCYCP EPECKYTGVY TDLYRHYHAE HKTDHSWFKC GEYNNAWLHV TGEKLSFLVL QEYEDGPLVV
201: VQCSMESHGI CVTVNCIAPC APGVGEFSCH LIYRNGSEKI TFESKKMNKI QKVSPENHVA NYKPIPYYLR GEASNFMSIP YYLLDEASIL KMQICIRRSG
301: EEV

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.