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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • nucleus 1
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
iPSORT:secretory
MultiLoc:nucleus
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G505400.1 Wheat cytosol 88.4 89.14
TraesCS3D01G512700.1 Wheat cytosol 88.12 88.86
TraesCS7B01G040200.1 Wheat cytosol 38.95 44.62
TraesCS7B01G351200.1 Wheat cytosol, nucleus, plastid 37.02 43.51
TraesCS3B01G573000.1 Wheat cytosol 38.12 43.26
TraesCS3B01G026900.1 Wheat nucleus 36.19 40.94
TraesCS3B01G027500.1 Wheat cytosol, endoplasmic reticulum, nucleus 33.43 38.53
TraesCS3B01G027000.1 Wheat cytosol, nucleus, plastid 36.19 36.69
TraesCS7B01G147600.1 Wheat plastid 19.61 31.14
TraesCS3B01G030800.1 Wheat nucleus, plasma membrane, plastid 25.14 31.06
TraesCS3B01G079000.1 Wheat cytosol, nucleus, plastid 26.52 30.87
KXG32022 Sorghum nucleus 28.18 30.27
EES00395 Sorghum cytosol, nucleus, plastid 28.18 29.82
Zm00001d008514_P001 Maize cytosol, nucleus, plastid 27.62 29.67
TraesCS3B01G053300.1 Wheat plastid 16.57 29.41
TraesCS3B01G055200.1 Wheat nucleus, plasma membrane, plastid 23.48 29.01
TraesCS3B01G054200.1 Wheat nucleus, peroxisome, plastid 26.52 28.92
TraesCS3B01G030900.1 Wheat cytosol, nucleus, plasma membrane 25.14 28.35
Os01t0121950-00 Rice cytosol, endoplasmic reticulum, nucleus 28.73 28.34
TraesCS3B01G079100.1 Wheat cytosol, endoplasmic reticulum, nucleus 25.41 28.31
TraesCS4B01G109100.1 Wheat cytosol, nucleus, plasma membrane 21.55 28.26
TraesCS3B01G028400.1 Wheat nucleus, peroxisome, plastid 26.24 28.19
TraesCS3B01G027400.1 Wheat nucleus, peroxisome, plastid 24.03 28.06
TraesCS3B01G030700.1 Wheat nucleus, peroxisome, plastid 24.86 28.04
TraesCS3B01G031000.1 Wheat nucleus, plasma membrane, plastid 25.14 27.83
TraesCS3B01G055300.1 Wheat cytosol, nucleus, peroxisome 25.14 27.83
TraesCS3B01G055000.1 Wheat nucleus, peroxisome, plastid 24.59 27.22
TraesCS3B01G028800.1 Wheat cytosol, nucleus, peroxisome 24.86 27.03
TraesCS7B01G030300.1 Wheat plastid 24.03 27.02
TraesCS3B01G054800.1 Wheat nucleus, peroxisome, plastid 24.31 26.91
TraesCS3B01G031300.1 Wheat nucleus, plasma membrane, plastid 24.59 26.89
TraesCS3B01G054300.1 Wheat nucleus, peroxisome, plastid 24.31 26.75
TraesCS3B01G054900.1 Wheat nucleus, peroxisome, plastid 24.03 26.61
KXG32016 Sorghum cytosol 23.48 26.4
TraesCS5B01G187100.1 Wheat cytosol, nucleus, plastid 19.89 26.09
TraesCS3B01G028000.1 Wheat mitochondrion 18.78 25.76
TraesCS3B01G055100.1 Wheat cytosol, nucleus, peroxisome 23.2 25.69
TraesCS3B01G054000.1 Wheat cytosol 21.82 25.24
TraesCS7B01G197600.1 Wheat cytosol 15.47 22.05
TraesCS3B01G116800.1 Wheat cytosol 17.96 19.7
TraesCS6B01G375700.1 Wheat plastid 18.51 18.93
TraesCS6B01G375600.1 Wheat plastid 17.68 18.44
TraesCS3B01G018200.1 Wheat plastid 22.1 18.31
TraesCS4B01G105700.1 Wheat cytosol, nucleus, peroxisome 21.27 15.68
TraesCS3B01G079200.1 Wheat cytosol, plastid 20.17 12.29
TraesCS3B01G018100.1 Wheat nucleus, peroxisome, plasma membrane 22.93 12.21
TraesCS1B01G344300.1 Wheat nucleus 22.38 9.51
Protein Annotations
Gene3D:3.30.40.10MapMan:35.2InterPro:7-in-absentia-prot_TRAF-domGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006511GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009056GO:GO:0009987GO:GO:0019538
InterPro:IPR008974InterPro:IPR013010InterPro:IPR013083PFAM:PF03145PFscan:PS51081PANTHER:PTHR10315
PANTHER:PTHR10315:SF33InterPro:SINA-likeSUPFAM:SSF49599InterPro:TRAF-likeEnsemblPlantsGene:TraesCS3B01G572900EnsemblPlants:TraesCS3B01G572900.1
InterPro:Znf_RING/FYVE/PHDInterPro:Znf_SIAHSEG:seg:::
Description
No Description!
Coordinates
chr3B:-:803628607..803630082
Molecular Weight (calculated)
37079.7 Da
IEP (calculated)
7.678
GRAVY (calculated)
0.071
Length
362 amino acids
Sequence
(BLAST)
001: MGLGGGGGEG ILAVAVVPME AIPMAEPQIL AGGKTVGLRA DLLDCHNCRL PLKPPIFKCD AEHLVCSSCR GAHAEACGGR AAVHSALADI FAAAATVPCG
101: YERYGCDAGG VVYHEAADHR RACQHAPCCC PDRAGAAGIG GCGFVGSRQD LLDHISGPDH SRPIIVVRYG QPWNLSLPLS RRWHILVGEE DKAVAAAAGA
201: DRHRNLFLVS LGERGATTAV SLVCVRADGT APGAPQFACK LAVESDGCRL TLESPLVCSS SLSGGLPGEV KCLPVPKDFL SGDSVPLSIH IEKLPVAPAP
301: PLGPGVAPAC TSPVAATPPP CPAATIPPSR PSSAGSSDNV AVKTVITDQS YKKRKSANPR KL
Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)
001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.