Factsheet for TraesCS7B01G030300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	88.82	88.82
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	64.91	66.99
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	56.83	59.03
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	46.89	54.71
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	46.27	53.99
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	46.58	48.23
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	48.14	47.69
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	47.2	46.2
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	47.2	45.65
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	45.03	44.34
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	40.06	44.03
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	45.03	43.67
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	43.48	43.61
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	39.13	43.0
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	43.48	42.81
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	44.72	42.73
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	43.48	42.3
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	42.86	42.2
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	41.93	42.06
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	42.24	41.59
TraesCS7B01G147600.1	Wheat	plastid	29.19	41.23
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	41.61	40.98
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	41.3	40.67
TraesCS3B01G053300.1	Wheat	plastid	22.98	36.27
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	33.85	35.39
EES00397	Sorghum	plastid	34.78	34.78
Os01t0122701-00	Rice	plastid	10.87	34.65
TraesCS7B01G040200.1	Wheat	cytosol	32.3	32.91
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	30.75	31.53
TraesCS3B01G054000.1	Wheat	cytosol	30.43	31.31
TraesCS3B01G026900.1	Wheat	nucleus	30.43	30.62
TraesCS3B01G028000.1	Wheat	mitochondrion	23.91	29.17
TraesCS3B01G018200.1	Wheat	plastid	38.51	28.38
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	29.5	26.61
TraesCS3B01G116800.1	Wheat	cytosol	24.84	24.24
TraesCS3B01G573000.1	Wheat	cytosol	23.91	24.14
TraesCS3B01G572900.1	Wheat	cytosol	27.02	24.03
TraesCS7B01G197600.1	Wheat	cytosol	18.94	24.02
TraesCS6B01G375600.1	Wheat	plastid	25.47	23.63
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	29.19	19.14
TraesCS6B01G375700.1	Wheat	plastid	19.88	18.08
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	36.96	17.5
TraesCS3B01G079200.1	Wheat	cytosol, plastid	29.81	16.16
TraesCS1B01G344300.1	Wheat	nucleus	40.99	15.49

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS7B01G030300	EnsemblPlants:TraesCS7B01G030300.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7B:+:28686377..28687438

Molecular Weight (calculated)

34329.2 Da

IEP (calculated)

7.039

GRAVY (calculated)

-0.087

Length

322 amino acids

Sequence
(BLAST)

001: MQAASATWEE RSRGSPSAME KGGDQSARKA RLELVVANGP VKRQMVVHEA GEIVPAEQGP TMQISVKMDV AVLHCPFCFL PFKPPVFQCN GGHLACGDCR
101: GEQPGSQWQC ERCERGGAFD IRSTAMEAVV SSARVECPHD GCGRYITYHE LDDHQSACPH AACKCPVPGC DFAGPPPALL RHLNTLHSVP VHSVQYRKVL
201: QLQVPVSEPR RLLLAEEDAR AFLVVGGALG LGTPLTVSVV CIRAGASQLP LYAAKVWVNG PQAAANGRAD TVSADIEVTS SKEPGAVDIE DLTFLTVPSK
301: LLAGAGPSRT VSLHIRIDKI TS

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.