Factsheet for TraesCS7D01G129300.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, peroxisome

Predictor Summary:

nucleus 1
plastid 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus, peroxisome
Any Predictor:	endoplasmic reticulum, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G030300.1	Wheat	plastid	88.82	88.82
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	31.06	74.63
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	66.15	68.27
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	59.01	63.33
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	50.62	59.06
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	53.73	54.57
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	47.83	47.09
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	47.52	47.08
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	45.34	46.65
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	44.72	44.04
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	43.79	43.52
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	43.17	42.64
Os01t0122701-00	Rice	plastid	11.8	37.62
EES00397	Sorghum	plastid	36.02	36.02
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	32.3	32.91
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	23.6	32.2
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	30.43	31.61
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	30.12	30.89
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	29.81	30.19
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	29.5	26.03
TraesCS6D01G324500.1	Wheat	plastid	25.78	23.78
TraesCS3D01G512700.1	Wheat	cytosol	26.09	23.4
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	36.65	23.18
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	22.98	22.84
TraesCS7D01G107300.1	Wheat	nucleus	28.26	18.84
TraesCS3D01G017300.1	Wheat	plastid	39.13	18.81
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	38.51	18.26
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	27.95	17.48
TraesCS1D01G333100.2	Wheat	nucleus	38.51	15.37
TraesCS7D01G071600.1	Wheat	cytosol	29.19	13.91
TraesCS3D01G017400.1	Wheat	plastid	39.75	12.4

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS7D01G129300	EnsemblPlants:TraesCS7D01G129300.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:81759691..81760753

Molecular Weight (calculated)

34169.2 Da

IEP (calculated)

8.107

GRAVY (calculated)

-0.096

Length

322 amino acids

Sequence
(BLAST)

001: MQAAGATSEE RSRGSPSAME KGGDQSARKA RLELVVANGP VKRQMVVHEA GEIVPAEQGP TMEVSVKMDV AVLHCPFCFL PFKPPVFQCS GGHLACGDCR
101: GERPGSQWQC ERCERGGPFH IRSTAMEAVV SSARVECPHD GCGRYITYHK LEDHQSACPH AACRCPVPGC DFAGPPPALL HHLNTLHSVP VHSVQYGKVL
201: QLQVPVSEPR RLLFAEKDGR AFLVVGGTLG LGAPIAVSVV CIRTGASSLP HYATKVWAKG PPAAANGRAD IVRADIEVTS SKEPGAIAVE DLTFLTVPSK
301: LLGGAGPSRT VSLHIRIDKI TS

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.