Factsheet for TraesCS3D01G016100.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	nucleus, peroxisome, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	87.16	86.36
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	88.69	86.05
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	87.16	85.84
TraesCSU01G045700.1	Wheat	nucleus, peroxisome, plastid	86.24	84.18
TraesCSU01G043600.1	Wheat	nucleus	86.24	84.18
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	74.31	74.54
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	73.7	74.38
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	66.06	65.45
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	63.91	64.31
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	57.19	59.74
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	58.41	58.41
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	43.73	45.11
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	44.04	44.72
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	40.98	44.67
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	17.74	43.28
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	36.09	42.75
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	27.52	38.14
Os01t0122701-00	Rice	plastid	11.62	37.62
EES00397	Sorghum	plastid	37.0	37.58
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	33.03	34.18
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	33.03	33.96
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	30.89	32.58
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	30.89	32.17
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	33.64	30.14
TraesCS3D01G512700.1	Wheat	cytosol	29.66	27.02
TraesCS6D01G324500.1	Wheat	plastid	24.77	23.21
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	21.41	21.6
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	33.03	21.22
TraesCS7D01G107300.1	Wheat	nucleus	28.44	19.25
TraesCS3D01G017300.1	Wheat	plastid	37.61	18.36
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	37.31	17.97
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	27.22	17.28
TraesCS7D01G071600.1	Wheat	cytosol	31.5	15.24
TraesCS1D01G333100.2	Wheat	nucleus	34.86	14.13
TraesCS3D01G017400.1	Wheat	plastid	37.31	11.82

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G016100	EnsemblPlants:TraesCS3D01G016100.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:5680268..5681386

Molecular Weight (calculated)

34121.1 Da

IEP (calculated)

7.010

GRAVY (calculated)

0.095

Length

327 amino acids

Sequence
(BLAST)

001: MQGAAVEGRS RASPDQGPAD EESAKKARLD LPDAHVKQEL ADGGAIVAAA APYSPREELA VRIDKRLLHC PLCTLPFKPP VFQCKAGHLA CGCCVAQLPC
101: GQCKACVDGG GFFDPCPALD AVVSSTRVEC PNAGCPRYVT YHEVAEHQTT CPHAPCRCTE PGCGYVGAPQ ALAGHLHTVH SVPVRAVQYG KASQLRLPVS
201: APRLVLLGDD DNRVFLLSVG ALGAGVTAVS VVCARASAAT RPRFACKLWV NLEAANCGKE DMVLVDMHMR SSSSPGAVVA AGEPTFLTVP PMYLVPAAAA
301: SGDGAASMEV PLHIRIDKLS PWSDALV

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.