Factsheet for TraesCS3D01G066100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	86.9	83.69
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	86.9	83.18
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	60.7	58.46
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	60.38	57.98
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	59.42	57.41
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	59.74	57.19
HORVU1Hr1G023820.1	Barley	extracellular	31.31	52.97
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	46.33	48.33
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	46.33	45.74
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	46.65	45.34
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	18.53	43.28
HORVU4Hr1G069550.1	Barley	plastid	26.2	42.05
Os01t0122701-00	Rice	plastid	13.42	41.58
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	34.5	39.13
EES00397	Sorghum	plastid	39.3	38.2
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	26.84	35.59
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	34.82	34.28
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	34.5	34.18
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	38.34	33.33
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	32.27	32.17
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	30.35	30.65
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	30.35	26.03
TraesCS3D01G512700.1	Wheat	cytosol	29.39	25.63
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	25.88	25.0
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	35.46	21.81
TraesCS6D01G324500.1	Wheat	plastid	24.28	21.78
TraesCS7D01G107300.1	Wheat	nucleus	28.11	18.22
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	39.3	18.11
TraesCS3D01G017300.1	Wheat	plastid	38.66	18.06
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	27.8	16.89
TraesCS7D01G071600.1	Wheat	cytosol	31.63	14.64
TraesCS1D01G333100.2	Wheat	nucleus	35.46	13.75
TraesCS3D01G017400.1	Wheat	plastid	41.53	12.6

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G066100	EnsemblPlants:TraesCS3D01G066100.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:+:29281739..29282769

Molecular Weight (calculated)

32438.3 Da

IEP (calculated)

7.063

GRAVY (calculated)

0.178

Length

313 amino acids

Sequence
(BLAST)

001: MEEADGSAKK ARLELPNGHV KQEVGVHLAV GGGDDGGAIV PAEAGYGSRV ELAVKIDMSV LHCPLCTLPF KPPVFQCNKG GHLGCGGCVA LLPGGQCRTC
101: EDGNGFFHPC PALDAIVSST KIACPHAGCQ TYVPYHEAAD HQSACPHAPC ACTETGCGFV GAPHALAGHL ADLHSVPVRT VQYGRASQVP VSGPRQLLVG
201: EEDGRAFLLT VGALGAAAAA VSVVCIRQSA ATQPRFSCKM WVNLVQPAAG ANSGRADMVL VDIQMRSTTR PGAVVAVNEL TFLAVPRMYM VLVAGDAASM
301: EVPLNIRIDK ISR

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.