Factsheet for TraesCS1D01G333100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G344300.1	Wheat	nucleus	46.59	44.13
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	13.75	40.22
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	14.87	40.0
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	15.37	38.51
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	6.2	37.31
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	14.37	36.59
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	13.75	35.46
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	14.13	34.86
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	14.0	34.56
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	13.63	33.85
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	13.14	32.72
EES00397	Sorghum	plastid	13.01	32.61
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	13.14	32.52
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	12.14	31.61
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	8.3	28.39
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	16.85	26.72
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	10.16	25.95
TraesCS3D01G017300.1	Wheat	plastid	20.94	25.22
Os01t0122701-00	Rice	plastid	3.1	24.75
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	9.42	23.9
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	9.54	23.77
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	9.17	23.57
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	18.84	22.39
TraesCS6D01G324500.1	Wheat	plastid	9.67	22.35
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	10.04	22.19
TraesCS3D01G512700.1	Wheat	cytosol	9.54	21.45
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	12.76	20.0
TraesCS7D01G107300.1	Wheat	nucleus	11.65	19.46
TraesCS3D01G017400.1	Wheat	plastid	21.19	16.57
TraesCS7D01G071600.1	Wheat	cytosol	9.29	11.09

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS1D01G333100
EnsemblPlants:TraesCS1D01G333100.2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

No Description!

Coordinates

chr1D:+:423275024..423278438

Molecular Weight (calculated)

88386.9 Da

IEP (calculated)

8.318

GRAVY (calculated)

-0.341

Length

807 amino acids

Sequence
(BLAST)

001: MEQPVSSAGS SNTEPSVRKR KKHSTSPELI SSSDDEDDFI PPRRSKHKNT HESKAAKAKK VSNNSSTIPT KNDEKKKKKK CRPTIRCAPE FIKSAIEILK
101: DCQRKRIKKL GFGWVLSLTV DALRTRNLPV FLMDNTSESL VINVGTQGGL KITPHAVHCV LGLPNGGIDP PPFSCAQKRE QLLTLKKLLG VPKQKNIDFE
201: VLYQRIRLGG DDDLTIRCFI IIVFNRLLFP TTSKYITGRD AAWTSDLHNL PNIDWCKVLV DDISHAVISW KSKRLAYPKR LANSKKLSEP TLSLTSCTLF
301: CIIFYLDNLL SMNRLDAIEI PRIAHFTNDI IANILHEDTQ IANGLETYGK LALRPKEGTY YFEDSQSQLL FTACPPSPPP TVRVLTNYSD NRASVHDGSS
401: GEPNVSKEVP AKFDHLSPSG QPSQTVETLE TGHEMMEETN LDVRHKTNAT ILPDKNQARS PSLLPTVDSS RDDLDNSASV HDGSCGAHGD IHTRQGSVFM
501: TANAVRTDYL SLEQERRKSP RDSQQLRSNG PSSKPQAAQT TEGTQVAPGT SMVRNRGSLL TMEKGDRKAR VETSLLDCRL CFRPLKPPVF QCNGGHSACG
601: TCLVELPGGQ CPMCKHGGGG FAPCLAMDGI VSSATIKCSH DGCQSHVTYH EHDDHHSACP HAPCFCTEPG CSFAGPPPAL LGHLATLHSW PVHKIEYGKV
701: LWLQVPVSEP RRLLLAEDGG VFLLVVGLLN AITVVSVVCI RASTSPSLQY PAMMWAYGPP DVAGVRCMVD TEAVTSSSKP RDVVAEKLPF VLLVPPTHVF
801: GAGASKE

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.