Factsheet for TraesCS3D01G017100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	68.24	91.95
TraesCS3B01G026900.1	Wheat	nucleus	85.53	85.0
HORVU3Hr1G005430.1	Barley	plastid	63.84	80.56
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	75.16	75.63
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	67.3	68.15
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	58.8	51.23
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	41.2	38.87
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	44.03	38.15
EES00395	Sorghum	cytosol, nucleus, plastid	39.94	37.13
TraesCS3D01G512700.1	Wheat	cytosol	41.82	37.05
KXG32022	Sorghum	nucleus	38.99	36.8
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	36.16	35.17
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	34.28	34.82
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	34.59	33.85
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	33.96	33.03
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	31.76	31.86
KXG32016	Sorghum	cytosol	32.08	31.68
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	27.36	31.52
TraesCS7D01G071600.1	Wheat	cytosol	66.98	31.51
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	31.45	30.86
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	30.82	30.06
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	30.19	29.81
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	28.62	29.35
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	27.67	29.33
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	11.32	26.87
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	25.79	25.31
TraesCS6D01G324500.1	Wheat	plastid	23.27	21.2
TraesCS7D01G107300.1	Wheat	nucleus	27.99	18.43
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	27.36	16.89
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	24.84	15.52
TraesCS3D01G017300.1	Wheat	plastid	30.5	14.48
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	27.67	12.96
TraesCS1D01G333100.2	Wheat	nucleus	23.9	9.42
TraesCS3D01G017400.1	Wheat	plastid	28.93	8.91

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G017100	EnsemblPlants:TraesCS3D01G017100.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:+:5862015..5863328

Molecular Weight (calculated)

33326.1 Da

IEP (calculated)

6.557

GRAVY (calculated)

0.067

Length

318 amino acids

Sequence
(BLAST)

001: MECAESCGKS VTSEQEEAKP ECEEGEVMMM QEQDGGAAAA AGEAMAPAQI DVRMDVALLH CQACLLPLKP PVFKCEAAGH VVCCFCHAGH AALCSRASAH
101: CGELDAVVGA VKVPCPYRAF GCERYVVYHE AADHQRACRC APCSCPEPGC AFVGSRAMLL GHFAAGHQRP AVTVRYGRAW NLGFSLAHRW HVLVGDEDRS
201: LFLVSLGPLG AATAVSLLCV RPDGEAGAAP RFRCKLSVER PAGDDKDNLV LMASAVSSSA LSTGAPAPGQ GMFLAVPQEL ISGDTLTLSL RIDLIQPAAA
301: GGAPKSATPQ ARTPRRMQ

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.