Factsheet for TraesCS3D01G017900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G018200.1	Wheat	plastid	45.38	52.86
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	64.83	48.6
TraesCS3D01G017300.1	Wheat	plastid	59.14	44.93
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	22.0	37.33
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	20.04	36.96
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	23.18	36.65
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	21.81	35.46
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	21.61	34.7
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	22.0	34.25
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	21.22	33.03
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	8.64	32.84
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	20.24	31.69
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	19.84	31.17
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	19.84	30.98
TraesCS3D01G017400.1	Wheat	plastid	61.1	30.14
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	12.77	27.54
EES00397	Sorghum	plastid	17.09	27.02
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	16.11	26.45
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	15.52	25.0
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	15.52	24.84
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	13.36	21.66
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	15.52	21.64
TraesCS6D01G324500.1	Wheat	plastid	14.73	21.49
TraesCS3D01G512700.1	Wheat	cytosol	14.34	20.33
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	12.38	19.44
TraesCS7D01G107300.1	Wheat	nucleus	16.11	16.98
TraesCS1D01G333100.2	Wheat	nucleus	26.72	16.85
Os01t0122701-00	Rice	plastid	3.34	16.83
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	15.72	15.53
TraesCS7D01G071600.1	Wheat	cytosol	13.75	10.36

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G017900	EnsemblPlants:TraesCS3D01G017900.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:6030030..6034284

Molecular Weight (calculated)

55348.7 Da

IEP (calculated)

6.971

GRAVY (calculated)

-0.084

Length

509 amino acids

Sequence
(BLAST)

001: MGGVGSDLND ASREGNGATS VAAAKTDEAG LEFLPLLSDK QRGFVRKIGF ESLLSMADFE IHKGLTLWLV DKFNCDTEAL EFEGGISIPV RPLVKFVLGI
101: PSGPIKVVED LDVDDALYNQ YSHNNRAKNA KMVATEMSFL GAARQVDNLK QMDWCNLVAD CLIKGIREYK ESDALFVHVK GCVHILSVIF IDLVKHASFE
201: VPNGFPRLSV VTTKHNKWVA SHPFGSLQIT DGVQAPPEVD VGRNRGSPST MEKDNRSAKK ARVELPSSGQ VKPAGEVTIK MDMSFLNCRV CSRPIKVPVF
301: QCNAGHLACG RCLAELPGEQ CQACEHGGGF SRCPTIDAVV SSLTVMCGHD GCGSDVPYNE LDDHQSKCQH APWFCMEPGC GFFGAPLALL SHMGTLHEMP
401: VHKVHYGNVH QLRLSERQPR CLLHGQGDGS VFLLVMGALC MATVVSVVCI RAGASSWPQY AVELRANGPP PPSSIEGSIL LDMKPVTSST RPGEVAVVEL
501: VRNKTRRWW

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.