Factsheet for TraesCS7D01G071600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	43.05	92.68
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	42.9	92.36
TraesCSU01G046100.1	Wheat	cytosol	40.24	86.35
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	24.26	69.49
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	31.51	67.41
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	31.51	66.98
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	24.7	45.75
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	18.34	36.8
EES00395	Sorghum	cytosol, nucleus, plastid	17.75	35.09
TraesCS3D01G512700.1	Wheat	cytosol	18.2	34.26
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	18.49	34.06
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	15.53	32.31
KXG32022	Sorghum	nucleus	15.98	32.05
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	14.64	31.63
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	15.24	31.5
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	14.79	30.58
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	12.43	30.43
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	14.2	30.28
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	13.91	29.19
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	13.91	28.83
KXG32016	Sorghum	cytosol	13.61	28.57
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	5.47	27.61
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	13.17	27.47
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	12.28	26.77
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	11.69	26.33
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	11.69	24.38
TraesCS6D01G324500.1	Wheat	plastid	10.36	20.06
TraesCS7D01G107300.1	Wheat	nucleus	13.17	18.43
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	11.69	15.34
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	10.36	13.75
TraesCS3D01G017300.1	Wheat	plastid	13.61	13.73
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	12.28	12.22
TraesCS1D01G333100.2	Wheat	nucleus	11.09	9.29
TraesCS3D01G017400.1	Wheat	plastid	12.87	8.43

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS7D01G071600	EnsemblPlants:TraesCS7D01G071600.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:-:42184172..42195293

Molecular Weight (calculated)

73277.1 Da

IEP (calculated)

6.977

GRAVY (calculated)

-0.109

Length

676 amino acids

Sequence
(BLAST)

001: MKKGESRGKR ASAEEVKSES EKGEATMQDE GEAGDALVAA ESMAPTQIDV RMDVTLLHCQ GCLLPLKPPV FKCDAVGHVV CYYCRAGHRA VCSRANTHCG
101: QLDKVVGAAK VPCPYKAFGC ERYVVFHEAA DHQRVCQCAP CTCPESACAF VGSRAMLVDH FAADHQRPAV MVRYGRSWSL SFSLSHGWHL LVGEEDRCVF
201: LVSLRPLGPG TVVSLMCLRP DGEAETGPRF WCKLSIEHRS GDKDYDLVLM TSPVISNALS TCAPALGQGM FLVVPQELLS GDTLTLSVRI DLIPPAAAAP
301: KSTTPQARAP RRMHEAGPDA QRTFKFKPKM TIWTKSHFKE FSPVSEMGQV VCYCVSNWGQ RIMLLSKFAF MAHINPAMEN GGEPSNKKSR LQEEPMAAVK
401: QERLEMKESQ GGAGALATVE EAMQVPWVAA EVNPLFYLCF ACQLPLRPPV HQCEGGHRVC GRCHGDRCTA CDPPAAYSPF PFMDDALGAV QLPCCYRADG
501: CGRKLMYHEA ADHALQCAFA PCHCPGHGCS MWASPPALLD HIAAAHSWPV TEVGYGSPFR IAVPTPWRGG GTHLLVERND PRLFLVTLSE FGEATAVTVV
601: CVREGTAAAA PRFRSTVWAE VASNTEENLF RRLSTVPSSS GGGNLSGGGP PVCLLVPPDF GSENEDLFLG VRIDKL

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.