Factsheet for TraesCS3D01G016800.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	62.1	87.84
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	62.1	87.84
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	62.1	87.84
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	53.18	70.76
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	68.15	67.3
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	67.52	67.09
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	53.82	46.3
TraesCS7D01G071600.1	Wheat	cytosol	92.68	43.05
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	39.17	36.5
EES00395	Sorghum	cytosol, nucleus, plastid	38.85	35.67
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	39.81	34.06
TraesCS3D01G512700.1	Wheat	cytosol	38.53	33.7
KXG32022	Sorghum	nucleus	35.03	32.64
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	33.76	32.62
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	32.17	32.27
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	33.44	32.11
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	31.21	30.91
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	32.17	30.89
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	30.89	30.12
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	26.43	30.07
KXG32016	Sorghum	cytosol	29.62	28.88
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	28.98	27.91
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	28.66	27.78
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	11.78	27.61
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	25.48	26.67
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	26.11	26.45
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	24.84	24.07
TraesCS6D01G324500.1	Wheat	plastid	21.97	19.77
TraesCS7D01G107300.1	Wheat	nucleus	28.66	18.63
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	25.16	15.34
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	21.66	13.36
TraesCS3D01G017300.1	Wheat	plastid	28.34	13.28
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	25.8	11.93
TraesCS1D01G333100.2	Wheat	nucleus	23.57	9.17
TraesCS3D01G017400.1	Wheat	plastid	26.75	8.14

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G016800	EnsemblPlants:TraesCS3D01G016800.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:-:5812552..5813779

Molecular Weight (calculated)

33805.7 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.026

Length

314 amino acids

Sequence
(BLAST)

001: MKEGESRGKR AGAEEVKSES EKGEVTMQDE GEAVDALVAA ESMAPTQIDV RMDVTLLHCQ GCFLPLKPPV FKCDAVGHVV CYYCRAGHRA VCSRANTHCG
101: QLDKVVGAAK VPCPYKGFGC DRYVVFHEAA DHQRVCQCAS CTCPESGCAF VGSRAMLVNH FAADHQRPAV TLRYGRSWSL SFSLSHGWHL LVGEEDCSVF
201: LVSLCPLGAG TAVSLMCVRP DGEAETGPRF WCKLSIERRG GDKDYDLVLM ASPVISNALS TCAPALGQGM FLVVPQELLS GDTLTLSVRI DLIPPAAVAP
301: KSTTPQARAP RRMQ

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.