Factsheet for TraesCSU01G040300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	100.0	100.0
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	100.0	100.0
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	87.84	62.1
TraesCSU01G046100.1	Wheat	cytosol	86.49	60.95
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	50.9	31.65
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	41.89	27.6
TraesCSU01G206900.1	Wheat	cytosol	19.37	27.04
EES00395	Sorghum	cytosol, nucleus, plastid	40.54	26.32
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	43.24	26.16
KXG32016	Sorghum	cytosol	37.39	25.78
KXG32022	Sorghum	nucleus	38.29	25.22
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	35.14	23.49
TraesCSU01G043600.1	Wheat	nucleus	34.23	22.69
TraesCSU01G045700.1	Wheat	nucleus, peroxisome, plastid	34.23	22.69
TraesCSU01G178600.1	Wheat	nucleus, plasma membrane, plastid	30.18	21.75
TraesCSU01G046200.1	Wheat	nucleus, plasma membrane, plastid	28.38	20.79
TraesCSU01G043700.1	Wheat	cytosol	28.83	20.25
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	27.03	19.61
TraesCSU01G040400.1	Wheat	cytosol	26.13	19.46
TraesCSU01G207000.1	Wheat	extracellular, plastid	5.86	10.32
TraesCSU01G166800.1	Wheat	plastid	31.08	9.97
TraesCSU01G166900.1	Wheat	plasma membrane	29.28	6.83

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCSU01G040300	EnsemblPlants:TraesCSU01G040300.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:-:32299007..32299999

Molecular Weight (calculated)

24101.1 Da

IEP (calculated)

7.787

GRAVY (calculated)

-0.105

Length

222 amino acids

Sequence
(BLAST)

001: MKEGESRGKR ASAEEVKSES EKGEVTMQDE GKAGDALVAP ESMAPTQIDV RMDVTLLHCQ GCLLPLKPPV FKCDAVGHVV CYYCRAGHRA VCSRTNTHCG
101: QLDKVVGAAK VPCPYKAFGC ERYVVFHEAA NHQRMCQCAP CTCPESACAF VGSRAMLANH FAADHQRPAV TVRHGRSWCL NFSLSHGWHL LVGEEDRGVF
201: LVSLRPLGPG TAVSLVLVQA LH

Best Arabidopsis Sequence Match ( AT5G62800.2 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.