Factsheet for TraesCSU01G178600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	nucleus, plasma membrane, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	51.62	57.61
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	50.32	56.16
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	50.0	55.8
TraesCSU01G046200.1	Wheat	nucleus, plasma membrane, plastid	53.57	54.46
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	52.6	51.92
TraesCSU01G045700.1	Wheat	nucleus, peroxisome, plastid	43.18	39.7
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	42.53	39.46
TraesCSU01G043600.1	Wheat	nucleus	42.21	38.81
TraesCSU01G207000.1	Wheat	extracellular, plastid	15.58	38.1
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	35.71	35.95
EES00397	Sorghum	plastid	35.39	33.85
Os01t0122701-00	Rice	plastid	11.04	33.66
TraesCSU01G206900.1	Wheat	cytosol	16.56	32.08
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	21.75	30.18
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	21.75	30.18
TraesCSU01G043700.1	Wheat	cytosol	29.87	29.11
TraesCSU01G046100.1	Wheat	cytosol	28.9	28.25
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	29.87	25.77
TraesCSU01G040400.1	Wheat	cytosol	20.13	20.81
TraesCSU01G166800.1	Wheat	plastid	36.69	16.33
TraesCSU01G166900.1	Wheat	plasma membrane	37.99	12.3

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCSU01G178600	EnsemblPlants:TraesCSU01G178600.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:269094440..269095487

Molecular Weight (calculated)

33241.3 Da

IEP (calculated)

7.111

GRAVY (calculated)

-0.121

Length

308 amino acids

Sequence
(BLAST)

001: METGGGQSAK KQRLDLVLAS PAPVKQEMLV LMHEAGEIVP AIQAPTKEAH LGLTVLQCHF CSRPLKPPVH QCNAGHLACG DCRGERPGNE RQCQKCERGG
101: GFDVHNTAMD AVVSAATVEC AHDGCGLFIT YHKLQDHQDA CPFAPCKCPV PGCGFEGPPQ TLPHHLTDVH PMPVQTIQYG KVLQLQVPVS EPRRLLFAEE
201: DERVFLVVGG ALGPSAPIAV SVVCIRAGAS PPPHYTAKVW VNGPPSAVNG RVNTVRAEIE VTSTKEPDVL VVEELMTFLA VPPKMLAWDG PSRSRMVWLR
301: IRIDKTSS

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.