Factsheet for TraesCS5B01G187100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	83.33	83.33
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	82.97	82.97
TraesCSU01G178600.1	Wheat	nucleus, plasma membrane, plastid	56.16	50.32
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	55.43	49.35
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	53.99	47.76
TraesCS7B01G030300.1	Wheat	plastid	53.99	46.27
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	40.22	37.88
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	39.13	36.86
TraesCS7B01G147600.1	Wheat	plastid	30.43	36.84
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	40.58	36.01
Os01t0122701-00	Rice	plastid	13.04	35.64
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	41.67	34.12
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	39.49	33.96
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	39.86	33.85
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	39.86	33.64
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	39.86	33.64
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	39.86	33.43
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	40.22	33.43
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	39.49	33.33
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	39.49	33.33
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	39.13	33.03
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	39.13	33.03
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	39.49	32.93
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	39.49	32.73
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	37.68	32.4
TraesCS3B01G053300.1	Wheat	plastid	23.91	32.35
EES00397	Sorghum	plastid	33.33	28.57
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	31.52	28.25
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	30.43	26.75
TraesCS7B01G040200.1	Wheat	cytosol	29.71	25.95
TraesCS3B01G028000.1	Wheat	mitochondrion	24.64	25.76
TraesCS3B01G054000.1	Wheat	cytosol	28.99	25.56
TraesCS3B01G026900.1	Wheat	nucleus	29.35	25.31
TraesCS7B01G197600.1	Wheat	cytosol	21.38	23.23
TraesCS3B01G018200.1	Wheat	plastid	36.59	23.11
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	29.71	22.97
TraesCS6B01G375600.1	Wheat	plastid	26.45	21.04
TraesCS3B01G572900.1	Wheat	cytosol	26.09	19.89
TraesCS3B01G573000.1	Wheat	cytosol	22.46	19.44
TraesCS3B01G116800.1	Wheat	cytosol	23.19	19.39
TraesCS6B01G375700.1	Wheat	plastid	22.46	17.51
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	30.07	16.9
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	38.41	15.59
TraesCS1B01G344300.1	Wheat	nucleus	39.13	12.68
TraesCS3B01G079200.1	Wheat	cytosol, plastid	27.17	12.63

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS5B01G187100	EnsemblPlants:TraesCS5B01G187100.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH

Description

No Description!

Coordinates

chr5B:-:339358964..339359876

Molecular Weight (calculated)

30602.4 Da

IEP (calculated)

6.772

GRAVY (calculated)

-0.021

Length

276 amino acids

Sequence
(BLAST)

001: MVVHEEGEIM QTEQEPTREL TKVSMDLTML HCPLCLRPLT SLVYECKGGH LACVDCRVER PRNQRQCQKC ERSSGFDMRS TAVEAVVSSL RVVWPHEGYG
101: LYVTYHKLAD HQSVCLVAPC KCPMPVCGYE GPPPALYHHI SNAHPMPVHR IQYGKVLQLQ VPLSEPRLLL FAEEDGRAFF LVGGVLDIGA PIAVSVVCIR
201: ARASPLPHYV AKLWANAPPG EPKGMTDVVK VEMEVTSSKD PDDVDLQELT FFTVLPKLLA GAKLVSLHIQ IDKLTS

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.