Factsheet for TraesCS3B01G028000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G054000.1	Wheat	cytosol	77.65	65.5
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	76.14	64.84
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	73.86	63.73
TraesCSU01G043700.1	Wheat	cytosol	75.76	63.29
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	77.27	58.45
TraesCS7B01G147600.1	Wheat	plastid	30.3	35.09
TraesCS3B01G053300.1	Wheat	plastid	23.11	29.9
KXG32025	Sorghum	cytosol	34.47	29.17
OQU86430	Sorghum	cytosol, nucleus, plastid	28.79	28.79
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	27.65	24.91
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	29.17	24.84
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	29.17	24.76
EES00400	Sorghum	cytosol	30.68	24.7
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	25.76	24.64
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	25.38	24.28
TraesCS7B01G030300.1	Wheat	plastid	29.17	23.91
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	26.14	23.55
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	28.79	23.38
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	29.17	23.12
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	28.41	22.94
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	28.79	22.89
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	27.65	22.74
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	28.03	22.63
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	28.03	22.63
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	28.03	22.63
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	28.03	22.63
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	28.79	22.55
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	28.03	22.49
TraesCS7B01G040200.1	Wheat	cytosol	26.89	22.47
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	27.27	22.02
TraesCS3B01G026900.1	Wheat	nucleus	26.52	21.88
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	26.14	21.5
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	26.89	21.45
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	25.0	21.43
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	25.0	21.02
TraesCS7B01G197600.1	Wheat	cytosol	19.7	20.47
TraesCS3B01G116800.1	Wheat	cytosol	23.86	19.09
TraesCS3B01G572900.1	Wheat	cytosol	25.76	18.78
Os01t0121900-00	Rice	cytosol	20.83	18.58
TraesCS6B01G375600.1	Wheat	plastid	24.24	18.44
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	23.11	17.09
TraesCS6B01G375700.1	Wheat	plastid	22.35	16.67
TraesCS3B01G573000.1	Wheat	cytosol	19.32	15.99
TraesCS3B01G018200.1	Wheat	plastid	25.0	15.1
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	25.38	13.65
TraesCS3B01G079200.1	Wheat	cytosol, plastid	25.38	11.28
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	26.89	10.44
TraesCS1B01G344300.1	Wheat	nucleus	29.92	9.27

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G028000	EnsemblPlants:TraesCS3B01G028000.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:-:12108323..12109513

Molecular Weight (calculated)

27787.7 Da

IEP (calculated)

7.907

GRAVY (calculated)

-0.080

Length

264 amino acids

Sequence
(BLAST)

001: MGLLPLAGSG ALGINKTRLK GQEAGMCPAK HAACAPCAAN LASKCPACDG AYERDEGADR YLMAVRVPCP NQAYGCGSSM VYCMAGDHRL VCPHAPCRCP
101: EPGCGFLGSP PALRGHLAER HQWQVTDIAY GSVLEVQMQP AELVRRLLPA EGGERLFLLV ASERGVKVVR VSAAADEEGP AASWYRCKVW VHASVDTDTG
201: HMDVLMLDAK VGSCAVPSVE AAMGAGGRCL PVPSDVPAPE GGGIVIRRRI DKEVKASRSP RTRG

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.