Factsheet for TraesCS3B01G031000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	nucleus, plasma membrane, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	88.69	90.34
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	78.9	88.05
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	87.16	87.16
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	85.32	85.32
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	84.71	84.71
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	75.84	84.64
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	84.4	84.4
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	84.4	84.4
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	82.26	83.8
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	81.65	81.9
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	78.29	79.01
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	74.31	73.41
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	75.23	73.0
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	73.39	72.29
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	65.14	64.55
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	63.91	62.76
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	60.55	60.18
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	58.41	58.77
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	54.74	57.56
TraesCS7B01G030300.1	Wheat	plastid	44.34	45.03
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	38.84	40.97
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	33.64	39.86
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	33.64	39.86
Os01t0122701-00	Rice	plastid	11.31	36.63
TraesCS7B01G147600.1	Wheat	plastid	25.08	35.96
EES00397	Sorghum	plastid	35.17	35.71
TraesCS3B01G053300.1	Wheat	plastid	20.8	33.33
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	30.58	32.47
TraesCS7B01G040200.1	Wheat	cytosol	29.97	31.01
TraesCS3B01G026900.1	Wheat	nucleus	29.97	30.62
TraesCS3B01G054000.1	Wheat	cytosol	28.75	30.03
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.52	28.66
TraesCS3B01G028000.1	Wheat	mitochondrion	22.02	27.27
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	29.36	26.89
TraesCS3B01G573000.1	Wheat	cytosol	25.08	25.71
TraesCS3B01G572900.1	Wheat	cytosol	27.83	25.14
TraesCS3B01G018200.1	Wheat	plastid	33.03	24.71
TraesCS7B01G197600.1	Wheat	cytosol	16.82	21.65
TraesCS6B01G375600.1	Wheat	plastid	22.32	21.04
TraesCS3B01G116800.1	Wheat	cytosol	21.1	20.91
TraesCS6B01G375700.1	Wheat	plastid	20.49	18.93
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	26.61	17.72
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	33.03	15.88
TraesCS3B01G079200.1	Wheat	cytosol, plastid	25.99	14.31
TraesCS1B01G344300.1	Wheat	nucleus	34.56	13.26

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G031000	EnsemblPlants:TraesCS3B01G031000.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:14111444..14112532

Molecular Weight (calculated)

34237.7 Da

IEP (calculated)

7.698

GRAVY (calculated)

0.123

Length

327 amino acids

Sequence
(BLAST)

001: MQGTAAAAEG RSRASPDKAV ESSKKARLDL ADGHMKQETA GAGDGGPIVG AAYIPRVELA VRIDKQVLHC PLCTLPFKPP VFQCKAGHPA CGGCVALLPF
101: GQCKACVDGG GFLDPCPAFD AVVSSTRIGC PNAGCQWYVT YHEVAEHQKA CPHAPCQCTE PGCSYVGAPQ ALAGHLHTIH LVPVRVVQYG KVSKLQLPVS
201: TTRLVLLGDD NCVFLMTMGA LGAGVTAMSV VCARARAATR PRFTCKMWVN LEPPPAAAAN CGKQDMVLVD MDMRSSSSPG PVVAAGEPTF LTVPPMYLVP
301: AAGDGASMEV PLHIRIDKLP PWSDTLV

Best Arabidopsis Sequence Match ( AT5G37890.1 )
(BLAST)

001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.