Factsheet for TraesCS3B01G079200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G065800.1	Wheat	cytosol	25.59	77.55
TraesCS3B01G053300.1	Wheat	plastid	21.72	63.24
TraesCS7B01G197600.1	Wheat	cytosol	16.33	38.19
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	29.97	36.25
TraesCS3B01G116800.1	Wheat	cytosol	17.34	31.21
TraesCS7B01G147600.1	Wheat	plastid	11.95	31.14
TraesCS7B01G030300.1	Wheat	plastid	16.16	29.81
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	16.16	29.18
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	16.16	28.83
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	16.33	28.78
TraesCS6B01G375600.1	Wheat	plastid	16.33	27.95
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	12.96	27.9
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	14.48	27.65
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	13.64	27.65
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	14.81	27.41
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	13.47	27.3
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	12.63	27.17
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	15.15	27.11
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	14.65	26.77
OQU86433	Sorghum	cytosol, nucleus, plastid	15.99	26.61
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	13.8	26.45
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	14.31	25.99
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	14.31	25.99
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	13.47	25.97
TraesCS3B01G054000.1	Wheat	cytosol	13.64	25.88
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	13.97	25.38
TraesCS3B01G028000.1	Wheat	mitochondrion	11.28	25.38
TraesCS3B01G026900.1	Wheat	nucleus	13.64	25.31
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	13.64	25.23
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	13.8	25.08
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	13.8	25.08
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	13.8	25.08
EES02585	Sorghum	cytosol, nucleus, plastid	13.64	24.92
TraesCS7B01G040200.1	Wheat	cytosol	13.13	24.68
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	12.96	24.52
OQU88982	Sorghum	plastid	10.27	24.21
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	13.47	24.17
TraesCS6B01G375700.1	Wheat	plastid	12.79	21.47
OQU86440	Sorghum	nucleus, plasma membrane, plastid	12.12	21.43
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	12.46	20.73
TraesCS3B01G572900.1	Wheat	cytosol	12.29	20.17
TraesCS3B01G573000.1	Wheat	cytosol	10.27	19.12
TraesCS3B01G018200.1	Wheat	plastid	13.47	18.31
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	13.3	11.62
TraesCS1B01G344300.1	Wheat	nucleus	14.81	10.33

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF33	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G079200	EnsemblPlants:TraesCS3B01G079200.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:50033348..50039814

Molecular Weight (calculated)

61124.4 Da

IEP (calculated)

7.667

GRAVY (calculated)

-0.272

Length

594 amino acids

Sequence
(BLAST)

001: MGEQQQHKKR PRCSASAEGS GGKKSSVLAL SSSPVATAAP SAPAAPSPVA TAKQGPAVAV TSPLAAMPPA PAAPSPAATT EGDMTTPAAT VVVTSPVAAM
101: APAPAAPGSA AMVVDLEPTS PVATVKPVRV VKPEDEVAEQ EDAAMLAGAA EDVEVAILAL PKKSFHCAAC LCPLKPPVFR CENEHFVCHA CGGDGGANKR
201: CGPCGRDVSY THSRFMNGVV DAYKRRQEVE RRGASPQSGG HRGTGGAGAQ PRCHGKASRH RGGDHSSGRH AADAYVPHGV GPGSSGTQFS GPCDARCHGR
301: GPGGDQSSGR HGAGAGGPSP VAIVKPVRVV KPEDEGAEVA EQEHGAMAEE EGEAVNLDLP KKLFHCAACP GPLRPPVVKC ENEHLVCHAC GGDGDGGGGA
401: TKHCVACPYK RFGCARSMAY HSAADHAASC RHAPCYCFDC RFDGSPVSLV RHLTARSGQH SWPVEKIEYE VAKPFVVPAS SEDQRRLLVA EDNCVFLLGV
501: GAGRDPGGRR PVNVVCVRGN ARPLYTGVLW VDGPPAAPGQ PLTSSFQLKA MVASCSVPGA VDMEQGWLHA HANPNMLHGE SGELHLRLCL TKLS

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.