Factsheet for TraesCS3B01G027500.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G046100.1	Wheat	cytosol	89.49	89.21
TraesCS7B01G040200.1	Wheat	cytosol	71.97	71.52
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	68.79	70.13
TraesCS3B01G026900.1	Wheat	nucleus	66.24	65.0
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	51.59	45.38
TraesCS7D01G071600.1	Wheat	cytosol	92.36	42.9
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	38.53	35.91
EES00395	Sorghum	cytosol, nucleus, plastid	37.9	34.8
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	39.81	34.06
TraesCS3B01G572900.1	Wheat	cytosol	38.53	33.43
KXG32022	Sorghum	nucleus	35.67	33.23
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	32.17	32.48
TraesCS7B01G147600.1	Wheat	plastid	23.57	32.46
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	33.76	31.83
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	27.71	31.52
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	32.8	31.31
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	28.98	31.06
TraesCS7B01G030300.1	Wheat	plastid	31.53	30.75
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	26.75	30.43
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	32.17	29.97
TraesCS3B01G053300.1	Wheat	plastid	19.43	29.9
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	27.71	29.69
KXG32016	Sorghum	cytosol	30.25	29.5
TraesCS3B01G573000.1	Wheat	cytosol	29.94	29.47
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	30.89	29.22
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	29.62	28.62
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	28.98	28.35
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	29.3	28.13
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	28.98	27.83
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	28.66	27.52
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	28.66	27.52
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	28.34	27.22
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	28.66	27.19
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	27.71	27.1
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	26.43	26.77
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	27.07	25.99
TraesCS3B01G054000.1	Wheat	cytosol	25.8	25.88
TraesCS3B01G028000.1	Wheat	mitochondrion	21.02	25.0
TraesCS7B01G197600.1	Wheat	cytosol	19.43	24.02
TraesCS3B01G116800.1	Wheat	cytosol	23.25	22.12
TraesCS6B01G375700.1	Wheat	plastid	22.29	19.77
TraesCS6B01G375600.1	Wheat	plastid	21.02	19.02
TraesCS3B01G018200.1	Wheat	plastid	26.43	18.99
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	25.8	16.5
TraesCS3B01G079200.1	Wheat	cytosol, plastid	24.52	12.96
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	27.71	12.79
TraesCS1B01G344300.1	Wheat	nucleus	25.8	9.51

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G027500	EnsemblPlants:TraesCS3B01G027500.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:+:11927748..11928939

Molecular Weight (calculated)

34043.3 Da

IEP (calculated)

7.166

GRAVY (calculated)

0.006

Length

314 amino acids

Sequence
(BLAST)

001: MKEGESRATR VSAKEVKSES EKGEVTMQDE GEAGDALVAV ESMAPTQIDV RMDVTLLHCQ GCLLPLKPPV FKCDAVGHVV CYYCRAGHRT VCSRANTHCG
101: QLDKVVGAAK VPCPYKAFGC ERYVVFHEAA DHQRVCLSAP CTCPESACAF MGSRAMLVDH FAADHQRPAV TVRYGRSWSL SFSLSHGWHL LVGEEDRSVF
201: LVSLCLLGAG TAVSLMCIRP DGEAETGPRF WCKLSIERRG GDKDYDLVLM TSPVISNALS TCAPALGQGM FLVVPQELLS GDMLTLSVRI DLIPPAAVAP
301: KSTTPQARVP RRMQ

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.