Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00395 | Sorghum | cytosol, nucleus, plastid | 73.89 | 72.81 |
| TraesCS1D01G296000.1 | Wheat | nucleus, plasma membrane, plastid | 31.45 | 44.92 |
| HORVU3Hr1G005430.1 | Barley | plastid | 32.94 | 44.05 |
| TraesCS7B01G351200.1 | Wheat | cytosol, nucleus, plastid | 38.87 | 42.53 |
| TraesCSU01G177200.1 | Wheat | cytosol, nucleus, plastid | 27.6 | 41.89 |
| TraesCSU01G040300.1 | Wheat | cytosol, nucleus, plastid | 27.6 | 41.89 |
| TraesCS3A01G021100.2 | Wheat | cytosol, nucleus, plastid | 27.6 | 41.89 |
| TraesCS7B01G040200.1 | Wheat | cytosol | 39.17 | 41.77 |
| TraesCS7A01G138000.1 | Wheat | nucleus | 39.17 | 41.77 |
| HORVU7Hr1G101970.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 38.87 | 41.59 |
| TraesCS7D01G440300.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 38.87 | 41.46 |
| TraesCS3D01G017100.1 | Wheat | cytosol, nucleus, plastid | 38.87 | 41.2 |
| TraesCS3B01G026900.1 | Wheat | nucleus | 38.28 | 40.31 |
| TraesCS7A01G451200.1 | Wheat | cytosol, nucleus, plastid | 37.69 | 40.06 |
| TraesCS3A01G028800.1 | Wheat | cytosol, nucleus, plastid | 37.98 | 40.0 |
| Os01t0121950-00 | Rice | cytosol, endoplasmic reticulum, nucleus | 43.03 | 39.51 |
| TraesCS3D01G016800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 36.5 | 39.17 |
| TraesCSU01G046100.1 | Wheat | cytosol | 36.2 | 38.73 |
| TraesCS3B01G027500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 35.91 | 38.53 |
| TraesCS3A01G028900.1 | Wheat | cytosol, nucleus, plastid | 37.98 | 36.26 |
| TraesCS3B01G027000.1 | Wheat | cytosol, nucleus, plastid | 37.98 | 35.85 |
| TraesCSU01G050700.1 | Wheat | cytosol, nucleus, plastid | 37.69 | 35.57 |
| TraesCS3D01G017000.1 | Wheat | cytosol, nucleus, plastid | 37.39 | 34.52 |
| TraesCS3B01G572900.1 | Wheat | cytosol | 29.67 | 27.62 |
| TraesCS3A01G505400.1 | Wheat | cytosol | 29.38 | 27.58 |
| TraesCS3D01G512700.1 | Wheat | cytosol | 29.08 | 27.3 |
| TraesCS2A01G361500.1 | Wheat | cytosol | 24.93 | 26.58 |
| TraesCS3B01G573000.1 | Wheat | cytosol | 23.74 | 25.08 |
| TraesCS3A01G505500.1 | Wheat | cytosol | 23.74 | 25.08 |
| TraesCS7D01G071600.1 | Wheat | cytosol | 36.8 | 18.34 |
Protein Annotations
| EntrezGene:103634779 | Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:7-in-absentia-prot_TRAF-dom | ProteinID:AQK90105.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016874 | GO:GO:0019538 |
| GO:GO:0046872 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | UniProt:K7UPY3 | PFAM:PF03145 |
| PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF33 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniParc:UPI000221CD37 | EnsemblPlantsGene:Zm00001d008514 | EnsemblPlants:Zm00001d008514_P001 | EnsemblPlants:Zm00001d008514_T001 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
| SEG:seg | : | : | : | : | : |
Description
E3 ubiquitin-protein ligase SINA-like 10
Coordinates
chr8:+:11254564..11256361
Molecular Weight (calculated)
35641.4 Da
IEP (calculated)
6.574
GRAVY (calculated)
-0.124
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQSKRGTQ SQLDNGEQVH NGKKARAQAM PDGVVKREQQ ETGEAADEGQ EQEEGEVSQG GGAGAMEEAQ ISLRFGLTLF HCRSCLLPLK PPTFKCEHGH
101: VICGVCRNSH AQVCRGAVYS PCVEVDAFVR DAKQPCPYEE FGCKSAVVYF EAAEHQRACP WAPCSCPAPG CGFFSSPARL AGHFTGAHAW PVTEVSYGKP
201: FRVALPPPQG WHVLVGAEDR CVFLVSACAL GVGAAAAVSL VCVRANGDAA DGAPQFRCRL WAEAANSKES VVVMMSMVKS SRLCGGAGAF SAADQGMFFV
301: MPPEIMDDAL GETPAVMVRI DRAGAAARSS SSRRVAE
101: VICGVCRNSH AQVCRGAVYS PCVEVDAFVR DAKQPCPYEE FGCKSAVVYF EAAEHQRACP WAPCSCPAPG CGFFSSPARL AGHFTGAHAW PVTEVSYGKP
201: FRVALPPPQG WHVLVGAEDR CVFLVSACAL GVGAAAAVSL VCVRANGDAA DGAPQFRCRL WAEAANSKES VVVMMSMVKS SRLCGGAGAF SAADQGMFFV
301: MPPEIMDDAL GETPAVMVRI DRAGAAARSS SSRRVAE
001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR
Arabidopsis Description
Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.