CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	72.81	73.89
KXG32022	Sorghum	nucleus	46.78	47.48
HORVU3Hr1G005430.1	Barley	plastid	31.29	42.46
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	38.3	41.46
TraesCS7B01G040200.1	Wheat	cytosol	38.3	41.46
KXG32016	Sorghum	cytosol	38.89	41.3
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	37.13	41.23
TraesCS7A01G138000.1	Wheat	nucleus	38.01	41.14
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	28.36	41.1
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	37.43	40.63
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	26.32	40.54
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	26.32	40.54
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	26.32	40.54
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	37.43	40.38
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	43.27	40.33
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	37.13	39.94
TraesCS3B01G026900.1	Wheat	nucleus	37.13	39.69
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	35.67	38.85
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	35.96	38.44
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	34.8	37.9
TraesCSU01G046100.1	Wheat	cytosol	34.21	37.14
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	36.84	35.69
EES00397	Sorghum	plastid	32.46	34.47
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	35.67	34.17
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	35.38	33.89
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	35.38	33.15
OQU86430	Sorghum	cytosol, nucleus, plastid	24.85	32.2
EES00400	Sorghum	cytosol	28.95	30.18
EES02585	Sorghum	cytosol, nucleus, plastid	27.78	29.23
KXG32025	Sorghum	cytosol	26.02	28.53
TraesCS3D01G512700.1	Wheat	cytosol	29.82	28.41
OQU86433	Sorghum	cytosol, nucleus, plastid	29.53	28.29
TraesCS3B01G572900.1	Wheat	cytosol	29.82	28.18
TraesCS3A01G505400.1	Wheat	cytosol	29.53	28.13
OQU88982	Sorghum	plastid	20.47	27.78
TraesCS2A01G361500.1	Wheat	cytosol	24.56	26.58
TraesCS3B01G573000.1	Wheat	cytosol	24.56	26.33
TraesCS3A01G505500.1	Wheat	cytosol	24.27	26.02
OQU86440	Sorghum	nucleus, plasma membrane, plastid	23.68	24.11
TraesCS7D01G071600.1	Wheat	cytosol	35.09	17.75

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:8070424	UniProt:C5XE60	ncoils:Coil
EnsemblPlants:EES00395	ProteinID:EES00395	ProteinID:EES00395.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G091700	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI0001A84812
RefSeq:XP_002455275.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:7990651..7992328

Molecular Weight (calculated)

36128.8 Da

IEP (calculated)

6.042

GRAVY (calculated)

-0.170

Length

342 amino acids

Sequence
(BLAST)

001: MAEQSKRGSQ LENGEHGHNG KKARAQAMPN GAIKQEQQEI DEAAEEEEEQ EEGEVSQGSG SGAMEEAQIN LRFGITLFHC RSCRLPLKPP TFKCAYGHVI
101: CGSCCNSHEQ VCRGAAVYSP CVEVDAFVRG AKQPCAYEEF GCKSSVVYFE AADHQRACQW APCSCPDPGC GFFSSPARLA SHFAGAHSWP VTEVSYGKPL
201: RVALPPPRGW HVLVGEEGRR VFLVSACTLG AAAAVSLVCV RANGDAAEGA PQFRCKLWAE AASSKESVAM MMSMVASCSM SGAGAFSAAD QGMFLAMPPE
301: ILDDAFGGEA PVLMVRIDRA GAAAKSTTPA PRSSRPVALG GC

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.