Factsheet for TraesCS3B01G026900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	66.56	90.25
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	85.0	85.53
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	82.5	82.5
HORVU3Hr1G005430.1	Barley	plastid	62.19	78.97
TraesCS7B01G040200.1	Wheat	cytosol	76.25	77.22
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	69.69	72.4
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	65.0	66.24
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	59.06	52.94
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	40.31	38.28
EES00395	Sorghum	cytosol, nucleus, plastid	39.69	37.13
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	42.19	36.78
TraesCS3B01G572900.1	Wheat	cytosol	40.94	36.19
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	33.44	34.41
KXG32022	Sorghum	nucleus	35.94	34.12
TraesCS7B01G147600.1	Wheat	plastid	24.06	33.77
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	34.69	33.33
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	34.06	33.13
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	30.31	33.11
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	33.44	31.75
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	29.06	31.74
KXG32016	Sorghum	cytosol	31.88	31.68
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	31.88	31.38
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	32.19	31.02
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	30.94	30.84
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	31.56	30.51
TraesCS7B01G030300.1	Wheat	plastid	30.62	30.43
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	26.25	30.43
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	30.94	30.28
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	30.62	29.97
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	30.62	29.97
TraesCS3B01G573000.1	Wheat	cytosol	29.69	29.78
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	30.31	29.66
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	30.31	29.66
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	30.0	29.36
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	25.31	29.35
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	29.38	29.28
TraesCS3B01G053300.1	Wheat	plastid	18.12	28.43
TraesCS3B01G054000.1	Wheat	cytosol	27.5	28.11
TraesCS3B01G028000.1	Wheat	mitochondrion	21.88	26.52
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	25.62	26.45
TraesCS7B01G197600.1	Wheat	cytosol	19.38	24.41
TraesCS3B01G116800.1	Wheat	cytosol	24.38	23.64
TraesCS6B01G375600.1	Wheat	plastid	22.19	20.46
TraesCS3B01G018200.1	Wheat	plastid	26.88	19.68
TraesCS6B01G375700.1	Wheat	plastid	21.56	19.49
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	27.19	17.72
TraesCS3B01G079200.1	Wheat	cytosol, plastid	25.31	13.64
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	27.81	13.09
TraesCS1B01G344300.1	Wheat	nucleus	25.31	9.51

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G026900	EnsemblPlants:TraesCS3B01G026900.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:-:11659297..11660453

Molecular Weight (calculated)

33417.2 Da

IEP (calculated)

6.489

GRAVY (calculated)

0.056

Length

320 amino acids

Sequence
(BLAST)

001: MERAESCGKS VTTSEEEEVM PESEEGEVMM MQEQDGGAAA AAEAMAPAQI DVRMDVALLH CQACLLPLKP PVFKCEAAGH VVCCFCRAGH AGLCSRASAH
101: CGELDVVVGA VKVPCPYRAF GCDRYLVYHE AAGHQRACRC APCSCPEPGC VFVGSRATLL GHFAAGHQRP AVTVRYGRAW NLGLSLAHRR HALVGEEDRS
201: VFLVSLGPLG AATAVSLLCV RPDGEDGAAP RFWCKLSVER PAGDGKDNLV LMASAVSSSA LSTGAPAPGQ GMFLAVPQEL ISGDTLTLSV PIDPIQPAAA
301: AAGGAPRSAT PQARTPRRMQ

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.