Factsheet for TraesCS3B01G030700.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	nucleus, peroxisome, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	86.29	86.29
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	76.64	83.96
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	84.74	83.18
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	83.8	82.26
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	74.14	81.23
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	82.55	81.04
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	82.24	80.73
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	81.93	80.43
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	81.31	79.82
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	76.64	75.46
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	73.21	72.53
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	72.27	70.09
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	70.09	67.77
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	70.41	67.06
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	66.04	64.24
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	58.57	57.85
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	59.19	57.06
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	53.89	55.63
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	56.39	55.02
TraesCS7B01G030300.1	Wheat	plastid	42.06	41.93
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	38.32	39.68
Os01t0122701-00	Rice	plastid	12.46	39.6
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	33.02	38.41
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	32.4	37.68
TraesCS7B01G147600.1	Wheat	plastid	25.23	35.53
EES00397	Sorghum	plastid	33.96	33.85
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	31.15	32.47
TraesCS7B01G040200.1	Wheat	cytosol	30.22	30.7
TraesCS3B01G053300.1	Wheat	plastid	19.0	29.9
TraesCS3B01G026900.1	Wheat	nucleus	29.28	29.38
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.1	27.71
TraesCS3B01G054000.1	Wheat	cytosol	26.79	27.48
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	29.28	26.33
TraesCS3B01G028000.1	Wheat	mitochondrion	21.5	26.14
TraesCS3B01G572900.1	Wheat	cytosol	28.04	24.86
TraesCS3B01G573000.1	Wheat	cytosol	24.61	24.76
TraesCS3B01G018200.1	Wheat	plastid	31.78	23.34
TraesCS6B01G375600.1	Wheat	plastid	23.05	21.33
TraesCS7B01G197600.1	Wheat	cytosol	16.82	21.26
TraesCS3B01G116800.1	Wheat	cytosol	21.5	20.91
TraesCS6B01G375700.1	Wheat	plastid	19.63	17.8
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	24.92	16.29
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	32.4	15.29
TraesCS3B01G079200.1	Wheat	cytosol, plastid	25.23	13.64
TraesCS1B01G344300.1	Wheat	nucleus	33.02	12.44

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G030700	EnsemblPlants:TraesCS3B01G030700.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:13993148..13994227

Molecular Weight (calculated)

34314.0 Da

IEP (calculated)

8.080

GRAVY (calculated)

0.123

Length

321 amino acids

Sequence
(BLAST)

001: MQGAPERRSR ASPEKANESS NKARLDLPDG HMKQEAAGGG DGGTIVGAAY IQRVELAVRI YKQVLHCPLC TLPFKPPCKA GHSACGGCVA LLPFGQCKAC
101: MDGGGFFDPC PALDAVVSST RIRCPNAGCQ WYVTYHEVAE HQKACPHAPC RCIEPGCGYV SAPQSLAGHL HTVHLVPVRD VQYGKVIKLN LPVSTRWMVL
201: LGDDNCVFLM IVGALAAGVT AVSAVCARAR AVARPRFMCK MWVNLETPLV AVANCGKEDM VLVDMHMRSS STPGAVVIAG EPTFLTVPPM YLVPAAGDRA
301: SMEVPLHIRI DKLSPWSETL V

Best Arabidopsis Sequence Match ( AT1G66660.2 )
(BLAST)

001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.