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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G110300.1 Wheat cytosol, nucleus, plasma membrane 87.68 87.68
TraesCS5B01G187100.1 Wheat cytosol, nucleus, plastid 82.97 82.97
TraesCSU01G178600.1 Wheat nucleus, plasma membrane, plastid 57.61 51.62
TraesCS3B01G027400.1 Wheat nucleus, peroxisome, plastid 54.71 48.71
HORVU3Hr1G005450.2 Barley endoplasmic reticulum, nucleus, peroxisome 54.71 48.4
TraesCS7B01G030300.1 Wheat plastid 54.71 46.89
TraesCS7B01G147600.1 Wheat plastid 31.16 37.72
TraesCS3B01G030800.1 Wheat nucleus, plasma membrane, plastid 39.86 37.54
TraesCS3B01G055200.1 Wheat nucleus, plasma membrane, plastid 39.13 36.86
TraesCS3B01G079000.1 Wheat cytosol, nucleus, plastid 40.22 35.69
Os01t0122701-00 Rice plastid 13.04 35.64
TraesCS3B01G030900.1 Wheat cytosol, nucleus, plasma membrane 39.86 34.27
TraesCS3B01G054300.1 Wheat nucleus, peroxisome, plastid 40.58 34.04
TraesCS3B01G054800.1 Wheat nucleus, peroxisome, plastid 40.22 33.95
TraesCS3B01G028400.1 Wheat nucleus, peroxisome, plastid 41.3 33.83
TraesCS3B01G055100.1 Wheat cytosol, nucleus, peroxisome 39.86 33.64
TraesCS3B01G055000.1 Wheat nucleus, peroxisome, plastid 39.86 33.64
TraesCS3B01G054900.1 Wheat nucleus, peroxisome, plastid 39.86 33.64
TraesCS3B01G031000.1 Wheat nucleus, plasma membrane, plastid 39.86 33.64
TraesCS3B01G079100.1 Wheat cytosol, endoplasmic reticulum, nucleus 39.49 33.54
TraesCS3B01G054200.1 Wheat nucleus, peroxisome, plastid 40.22 33.43
TraesCS3B01G028800.1 Wheat cytosol, nucleus, peroxisome 40.22 33.33
TraesCS3B01G055300.1 Wheat cytosol, nucleus, peroxisome 39.13 33.03
TraesCS3B01G030700.1 Wheat nucleus, peroxisome, plastid 38.41 33.02
TraesCS3B01G031300.1 Wheat nucleus, plasma membrane, plastid 39.13 32.63
TraesCS3B01G053300.1 Wheat plastid 23.55 31.86
EES00397 Sorghum plastid 33.7 28.88
TraesCS7B01G351200.1 Wheat cytosol, nucleus, plastid 31.88 28.57
TraesCS3B01G027500.1 Wheat cytosol, endoplasmic reticulum, nucleus 31.52 27.71
TraesCS7B01G040200.1 Wheat cytosol 31.16 27.22
TraesCS3B01G026900.1 Wheat nucleus 30.43 26.25
TraesCS3B01G028000.1 Wheat mitochondrion 24.28 25.38
TraesCS3B01G054000.1 Wheat cytosol 28.62 25.24
TraesCS3B01G018200.1 Wheat plastid 37.32 23.57
TraesCS7B01G197600.1 Wheat cytosol 21.38 23.23
TraesCS3B01G027000.1 Wheat cytosol, nucleus, plastid 29.35 22.69
TraesCS6B01G375600.1 Wheat plastid 27.9 22.19
TraesCS3B01G573000.1 Wheat cytosol 25.36 21.94
TraesCS3B01G572900.1 Wheat cytosol 28.26 21.55
TraesCS3B01G116800.1 Wheat cytosol 25.36 21.21
TraesCS6B01G375700.1 Wheat plastid 22.83 17.8
TraesCS4B01G105700.1 Wheat cytosol, nucleus, peroxisome 28.99 16.29
TraesCS3B01G018100.1 Wheat nucleus, peroxisome, plasma membrane 38.77 15.74
TraesCS3B01G079200.1 Wheat cytosol, plastid 27.9 12.96
TraesCS1B01G344300.1 Wheat nucleus 39.86 12.91
Protein Annotations
Gene3D:3.30.40.10MapMan:35.1InterPro:7-in-absentia-prot_TRAF-domGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006511GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009056GO:GO:0009987GO:GO:0019538
InterPro:IPR008974InterPro:IPR013010InterPro:IPR013083PFAM:PF03145PFscan:PS51081PANTHER:PTHR10315
PANTHER:PTHR10315:SF46InterPro:SINA-likeSUPFAM:SSF49599InterPro:TRAF-likeEnsemblPlantsGene:TraesCS4B01G109100EnsemblPlants:TraesCS4B01G109100.1
InterPro:Znf_RING/FYVE/PHDInterPro:Znf_SIAH::::
Description
No Description!
Coordinates
chr4B:+:121451470..121452382
Molecular Weight (calculated)
30364.2 Da
IEP (calculated)
5.896
GRAVY (calculated)
0.045
Length
276 amino acids
Sequence
(BLAST)
001: MVVHEEGEIM QSEQDPMMEP SKVLMDLTVL HCPLCLRPLM PPVYECKGGH LACADCRVEC PKNQRQCQKC ERDCGFDVRN TAVDSIISSV RVECPHEGCG
101: LYVTYHKLAD HQSVCSLAPC KCPVPVCGYE GPLPVLYHHI STAHPMPVHR IQYGKVLQLQ VPLSEPWLLL FVEEDRCAFF LVGGVLDIGA PIVVSVVCIR
201: AGASPLPHYM AKLWANGPPG EPKGTTDAVK VEMEVTSSKD PDDVDVQELT FLTLPPKLLA GAKLVSLHIQ IDKFTS
Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.