Factsheet for TraesCS3B01G054800.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	nucleus, peroxisome, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	97.55	97.55
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	97.25	97.25
TraesCSU01G206900.1	Wheat	cytosol	46.79	96.23
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	95.11	95.11
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	85.02	94.88
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	88.07	94.12
TraesCSU01G207000.1	Wheat	extracellular, plastid	35.78	92.86
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	89.6	91.28
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	89.6	89.6
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	85.32	85.32
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	75.23	83.96
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	81.04	82.55
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	79.2	79.45
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	74.62	75.31
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	76.15	73.89
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	74.31	73.19
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	71.25	70.39
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	65.14	64.55
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	60.86	61.23
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	60.55	60.18
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	61.16	60.06
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	55.66	58.52
TraesCS7B01G030300.1	Wheat	plastid	42.2	42.86
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	40.06	42.26
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	33.95	40.22
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	33.33	39.49
TraesCS7B01G147600.1	Wheat	plastid	26.3	37.72
Os01t0122701-00	Rice	plastid	11.62	37.62
EES00397	Sorghum	plastid	32.42	32.92
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	30.58	32.47
TraesCS3B01G053300.1	Wheat	plastid	19.57	31.37
TraesCS7B01G040200.1	Wheat	cytosol	29.97	31.01
TraesCS3B01G026900.1	Wheat	nucleus	29.97	30.62
TraesCS3B01G054000.1	Wheat	cytosol	28.44	29.71
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	28.13	29.3
TraesCS3B01G028000.1	Wheat	mitochondrion	22.63	28.03
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	28.75	26.33
TraesCS3B01G018200.1	Wheat	plastid	34.56	25.86
TraesCS3B01G573000.1	Wheat	cytosol	24.46	25.08
TraesCS3B01G572900.1	Wheat	cytosol	26.91	24.31
TraesCS7B01G197600.1	Wheat	cytosol	16.82	21.65
TraesCS3B01G116800.1	Wheat	cytosol	21.1	20.91
TraesCS6B01G375600.1	Wheat	plastid	21.71	20.46
TraesCS6B01G375700.1	Wheat	plastid	20.8	19.21
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	26.3	17.52
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	34.86	16.76
TraesCS3B01G079200.1	Wheat	cytosol, plastid	25.38	13.97
TraesCS1B01G344300.1	Wheat	nucleus	34.86	13.38

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G054800
EnsemblPlants:TraesCS3B01G054800.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:-:28408501..28409589

Molecular Weight (calculated)

34641.3 Da

IEP (calculated)

8.173

GRAVY (calculated)

0.134

Length

327 amino acids

Sequence
(BLAST)

001: MQGAAAAAER RSRASPDKAD ESSKKARLDL PDGHMKQEAA GGGDGGAIVG VAYIQRVELA VRIDKQVLHC PLCTLPFKPP VFQCKAGHPA CSGCVALLPF
101: SQCKACVDGG GFFDPCPTLD TLVSSTRIGC PNVGCQWYVT YHEVTKHQKV CPYAPCRCTE PGCGYVGAPQ ALAGHLRTVH LVPVRAVQYG KVSKLQLSVS
201: TMRLVLLGDD NCVFLMTVGA LGAGVTAVSV VCARARAVTR PRFTCKMWVN LETPPAVVAN CGKEDMVLVD MHMRSSSSPG AVVPAGEPTF LTVPPMYLVP
301: TAGDGASMEV PLYIRIDKLS PWSDALV

Best Arabidopsis Sequence Match ( AT5G37890.1 )
(BLAST)

001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.