Factsheet for TraesCSU01G206900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	93.08	48.37
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	96.23	46.79
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	95.6	46.48
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	94.97	46.18
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	94.97	46.18
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	73.58	39.93
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	78.62	38.34
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	73.58	36.11
TraesCSU01G045700.1	Wheat	nucleus, peroxisome, plastid	71.07	33.73
TraesCSU01G043600.1	Wheat	nucleus	70.44	33.43
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	62.89	30.3
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	56.6	27.11
TraesCSU01G046200.1	Wheat	nucleus, plasma membrane, plastid	37.74	19.8
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	27.04	19.37
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	27.04	19.37
TraesCSU01G178600.1	Wheat	nucleus, plasma membrane, plastid	32.08	16.56
EES00397	Sorghum	plastid	32.08	15.84
TraesCSU01G043700.1	Wheat	cytosol	30.82	15.51
TraesCSU01G046100.1	Wheat	cytosol	27.04	13.65
TraesCSU01G040400.1	Wheat	cytosol	25.16	13.42
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	28.93	12.89
TraesCSU01G166800.1	Wheat	plastid	32.08	7.37
TraesCSU01G166900.1	Wheat	plasma membrane	29.56	4.94
Os01t0122701-00	Rice	plastid	0.0	0.0
TraesCSU01G207000.1	Wheat	extracellular, plastid	0.0	0.0

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974	InterPro:IPR013083
PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCSU01G206900
EnsemblPlants:TraesCSU01G206900.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:+:307487797..307488384

Molecular Weight (calculated)

16951.4 Da

IEP (calculated)

7.965

GRAVY (calculated)

-0.175

Length

159 amino acids

Sequence
(BLAST)

001: MQGAAAAAER RSRASPDKAD ESSKKARLDL PDGHMKQEAA GGGDGGSIIG AAYIQRVELA VRIDKQVLHC PLCTLPFKPP VFQCKAGHPA CSGCVALLPF
101: RQCKACVDGG GFFDPCPTLD ALVSSTRIGC PNVGCQWYVT YHEVTEHQKV CPYAPCRCT

Best Arabidopsis Sequence Match ( AT5G37890.1 )
(BLAST)

001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.