Factsheet for TraesCS3D01G028400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	nucleus, plasma membrane, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	84.57	84.05
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	79.01	79.75
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	79.01	78.29
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	69.44	76.79
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	68.83	76.11
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	75.62	74.92
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	70.68	74.84
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	75.31	74.62
TraesCSU01G207000.1	Wheat	extracellular, plastid	29.01	74.6
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	74.69	74.01
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	74.38	73.7
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	74.38	73.7
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	74.38	73.7
TraesCSU01G206900.1	Wheat	cytosol	36.11	73.58
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	72.53	73.21
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	67.59	66.36
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	62.35	62.15
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	57.41	59.42
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	56.79	56.27
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	45.37	46.37
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	43.52	43.79
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	39.2	42.33
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	16.98	41.04
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	34.88	40.94
Os01t0122701-00	Rice	plastid	12.65	40.59
EES00397	Sorghum	plastid	38.58	38.82
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	24.38	33.47
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	32.41	33.23
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	30.56	31.94
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	30.86	31.45
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.78	28.66
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	30.25	26.85
TraesCS3D01G512700.1	Wheat	cytosol	27.78	25.07
TraesCS6D01G324500.1	Wheat	plastid	24.07	22.35
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	21.6	21.6
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	31.17	19.84
TraesCS7D01G107300.1	Wheat	nucleus	26.85	18.01
TraesCS3D01G017300.1	Wheat	plastid	36.11	17.46
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	26.54	16.7
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	34.26	16.35
TraesCS7D01G071600.1	Wheat	cytosol	27.47	13.17
TraesCS1D01G333100.2	Wheat	nucleus	32.72	13.14
TraesCS3D01G017400.1	Wheat	plastid	34.88	10.95

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G028400
EnsemblPlants:TraesCS3D01G028400.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:-:9947379..9948458

Molecular Weight (calculated)

33997.2 Da

IEP (calculated)

8.312

GRAVY (calculated)

0.076

Length

324 amino acids

Sequence
(BLAST)

001: MQGAAVEGRI RDSPDKAGES AKKARLDLPE GHVRQEAAGG GDGGAIVAAA YSPRVELAVR IDKQVLHCPL CTVPFKPPVF QCKAGHLACG SCVVQLPFGQ
101: CKPCVNGGGF FNPCPALDAV VSSTRIGCPN AGCQRYVTYH EVAEHQKACP HAPCHCMEPG CGYAGAPQAL AGHLYTIHSV PVRAVQYGKV SKFQLPVSAP
201: RLVLLGDDNN HVFVLTVGAL GAGAAAVSVV CARARAATRP RFTCKMWVNL ERPPAAAANC SKQDMVLVDM HIRSSSSPGA VAAADEPTFL PVPRMYLVPA
301: AAGEGVPMEV PLHIRIDKVS PWSV

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.