Factsheet for TraesCS7D01G107300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G053300.1	Wheat	plastid	38.1	90.2
TraesCS3A01G065800.1	Wheat	cytosol	25.88	63.78
TraesCS3A01G065900.1	Wheat	cytosol	29.4	62.01
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	46.38	43.5
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	17.18	35.17
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	22.77	33.95
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	20.29	30.15
TraesCS6D01G324500.1	Wheat	plastid	21.33	29.51
OQU86433	Sorghum	cytosol, nucleus, plastid	21.74	29.41
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	18.84	28.8
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	18.63	28.66
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	19.25	28.44
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	18.84	28.26
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	16.15	28.26
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	19.05	28.13
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	18.22	28.11
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	18.43	28.08
EES02585	Sorghum	cytosol, nucleus, plastid	18.84	28.0
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	18.43	27.99
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	7.66	27.61
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	16.98	27.33
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	17.39	27.1
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	18.01	26.85
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	17.6	26.07
OQU88982	Sorghum	plastid	13.04	25.0
OQU86440	Sorghum	nucleus, plasma membrane, plastid	16.77	24.11
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	17.39	23.01
TraesCS3D01G512700.1	Wheat	cytosol	16.56	22.28
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	16.98	16.11
TraesCS3D01G017300.1	Wheat	plastid	21.53	15.52
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	18.84	13.4
TraesCS7D01G071600.1	Wheat	cytosol	18.43	13.17
TraesCS1D01G333100.2	Wheat	nucleus	19.46	11.65
TraesCS3D01G017400.1	Wheat	plastid	21.74	10.17

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS7D01G107300	EnsemblPlants:TraesCS7D01G107300.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:64666865..64668397

Molecular Weight (calculated)

50048.8 Da

IEP (calculated)

8.491

GRAVY (calculated)

-0.194

Length

483 amino acids

Sequence
(BLAST)

001: MAEQGKKSGE QDKKRPRFSE KAEGSGAKKS SAVAVTTVSP AELAVPSPVA PRRAALSSPS PVAKAQPVTS PLAFKPPALP VPSPVATKTR TLAELNPVPI
101: PKSAATVAVT SPVAATPPAP SPAATRVLAA QSPAATKTPT PSPVATVAVT SPVTAMPSAP SPAATRALEA QSPVATKTPT PSPVATAKPA AVVKRDEEGA
201: EHNGGAMLAL AAEEEEPANL DLPKKLFHCA ACRAPLKPPV FKCEKEHFVC CACGGGGDGR ANRHCGPCGH DVSYTHSEFM DGVVGAYKVP CPYKQHGCAS
301: SIVYHAAADH KAKCAHAPCY CFECMPPFEG SPAELLRHLT APSGKHSWLT DKIKYESSHP LVVQAPSGDY RCLLLAEDGS VFLLAVGAGR GPAGRRPVNV
401: VCVRGNADAD SRPLYTGVLW VDGPPATAGH LRGSVQVKGD VASCSVPGEV DMEQGWLHAH VNPNMLHGES GEVHLRLRIT RFP

Best Arabidopsis Sequence Match ( AT1G66660.2 )
(BLAST)

001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.