Factsheet for TraesCS3D01G016200.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	80.65	81.7
TraesCSU01G043700.1	Wheat	cytosol	81.61	80.06
TraesCS3B01G054000.1	Wheat	cytosol	79.35	78.59
TraesCS3B01G028000.1	Wheat	mitochondrion	64.84	76.14
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	74.19	65.9
KXG32025	Sorghum	cytosol	36.45	36.22
OQU86430	Sorghum	cytosol, nucleus, plastid	28.71	33.71
EES00400	Sorghum	cytosol	34.84	32.93
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	32.9	32.18
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	30.32	31.33
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	32.9	31.19
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	32.58	30.89
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	32.26	30.77
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	31.94	30.56
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	31.61	30.43
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	30.65	30.35
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	26.77	30.07
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	31.61	30.06
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	12.9	29.85
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	22.26	29.24
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	29.35	28.62
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	28.06	27.53
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	26.45	26.11
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.13	25.0
TraesCS6D01G324500.1	Wheat	plastid	26.77	23.78
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	27.42	23.29
Os01t0121900-00	Rice	cytosol	21.29	22.3
TraesCS3D01G512700.1	Wheat	cytosol	24.84	21.45
TraesCS7D01G107300.1	Wheat	nucleus	27.1	17.39
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	26.45	16.11
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	26.45	15.92
TraesCS3D01G017300.1	Wheat	plastid	29.35	13.58
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	29.68	13.55
TraesCS7D01G071600.1	Wheat	cytosol	26.77	12.28
TraesCS1D01G333100.2	Wheat	nucleus	31.61	12.14
TraesCS3D01G017400.1	Wheat	plastid	29.03	8.72

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G016200	EnsemblPlants:TraesCS3D01G016200.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:5725388..5726632

Molecular Weight (calculated)

33101.8 Da

IEP (calculated)

6.304

GRAVY (calculated)

-0.156

Length

310 amino acids

Sequence
(BLAST)

001: MARGGKKARV ESPAADMTLG EDDLQVKEEE ETGAMVGVAA ANAAAPRVEI VVEFDKSLLD CPLCSLPLKP PVFQCRAKHA ACGPCAANHA NKCPACDGAY
101: ERDEGADRYL LAVRVPCPNQ AYGCGSSVVY CMAGDHRLVC PHAPCRCPEP GCGFLGPPPA LRGHLAERHA WPVTDITYGS VLEVQMQAVE QGRRLLAAED
201: GERLFLLVAS ERGVKVVRVA APAEEEGWYR CKVWVHAPVD TDTGHMDVQM LDGKVESCAV PSVEAAMGVG GRYLPVPSDV PAPEGGGIVI RLRIDKEVKV
301: RASRSPRSRA

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.