Factsheet for TraesCS3D01G016900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	nucleus, plasma membrane, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G046200.1	Wheat	nucleus, plasma membrane, plastid	94.0	93.07
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	94.0	90.97
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	38.67	86.57
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	59.0	59.8
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	63.33	59.01
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	52.0	56.52
HORVU3Hr1G005470.1	Barley	plastid	54.67	51.57
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	53.33	50.47
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	48.33	46.33
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	48.33	44.34
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	44.67	40.98
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	43.0	39.69
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	42.33	39.2
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	41.67	38.34
EES00397	Sorghum	plastid	36.67	34.16
Os01t0122701-00	Rice	plastid	11.33	33.66
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	31.33	30.32
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	31.67	30.06
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	22.33	28.39
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	29.33	27.67
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	26.67	25.48
TraesCS3D01G512700.1	Wheat	cytosol	29.33	24.51
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	29.0	23.84
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	24.33	22.53
TraesCS6D01G324500.1	Wheat	plastid	25.67	22.06
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	37.33	22.0
TraesCS3D01G017300.1	Wheat	plastid	42.33	18.96
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	41.67	18.41
TraesCS7D01G107300.1	Wheat	nucleus	27.33	16.98
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	27.0	15.73
TraesCS1D01G333100.2	Wheat	nucleus	40.0	14.87
TraesCS3D01G017400.1	Wheat	plastid	43.33	12.6
TraesCS7D01G071600.1	Wheat	cytosol	26.33	11.69

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G016900	EnsemblPlants:TraesCS3D01G016900.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:5814621..5815642

Molecular Weight (calculated)

31898.6 Da

IEP (calculated)

7.809

GRAVY (calculated)

-0.061

Length

300 amino acids

Sequence
(BLAST)

001: MEMELPNLNV PVKQEIVVHN EGAQGRGGGG GAIVEASGHG TRRTEATVRI EANMLDCPIC SSPFKPPVFQ CKGGHLACGS CVTKLPWKQC QRCDLGGDFH
101: GCPFVDAFVS SARMKCDHHG CGRQVTYHKL EDHKSACPLA PCRCPVPGCG FEGPPPALPH HLSAVHSMPV HVVQYSKVLQ LEVPVSEPRR LLFAEEDGRA
201: FLVVGGSLGL GVPIALSVVC IRAGASPPPH YVAKVWANGP PVANDRTDTV RADIQVTSSK EPGTVAVEEL TFLTVPHKLL AGAGPSRTVS LHVRIDKITS

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.