Factsheet for HORVU3Hr1G005470.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	51.57	54.67
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	52.83	54.19
TraesCSU01G046200.1	Wheat	nucleus, plasma membrane, plastid	51.26	53.8
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	37.42	40.2
HORVU1Hr1G023820.1	Barley	extracellular	19.81	34.05
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	31.76	32.37
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	13.21	31.34
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	30.19	29.09
HORVU4Hr1G069550.1	Barley	plastid	16.98	27.69
HORVU3Hr1G005290.2	Barley	plastid	32.08	27.27
EES00397	Sorghum	plastid	25.79	25.47
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	10.06	24.43
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	9.75	23.66
HORVU2Hr1G020530.1	Barley	extracellular	9.43	22.9
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	21.38	21.59
HORVU3Hr1G005430.1	Barley	plastid	16.67	21.03
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	22.96	20.28
HORVU4Hr1G016950.1	Barley	plastid	18.87	19.61
HORVU6Hr1G082920.1	Barley	plastid	19.18	15.93
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	14.47	13.07
HORVU3Hr1G005410.9	Barley	mitochondrion	27.67	11.72
Os01t0122701-00	Rice	plastid	3.14	9.9
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	28.3	8.62

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A287K023	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G005470	EnsemblPlants:HORVU3Hr1G005470.1	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	TMHMM:TMhelix
InterPro:TRAF-like	UniParc:UPI000B46B0E7	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

No Description!

Coordinates

chrchr3H:+:13515734..13517880

Molecular Weight (calculated)

33739.0 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.170

Length

318 amino acids

Sequence
(BLAST)

001: MIEDAVTVPC ACIAFACCLS QPLLVFSSSR SPKTQRKRER ESSFSRRTQA ASLAMVMELL NGPVKQEIVV HNAGAQASGG GGGAAVEASE HGLTMTAPTA
101: TATPTVRMEA NMLDCPICSS PFKPPVLQCK RGHLACGSCV AKLPWKQCQR CDDGGDLSAC PFVDALVSSA RIKCDHDGCG RRVIYHKLGD HKSACPLAPC
201: KCPMPGCAFA CAPPALPHHL IAVHGVPVHA VQYGKVLQLE VPVSEPRRLL FAEEDGRAFL VVGSALGPLX QGACPSPCRW CASGPGPPHR RTMRPRCGRT
301: GRRSRQTAGP TRSERRSR

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.