Skip to main content
crop-pal logo
Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • nucleus 1
  • peroxisome 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G105700.1 Wheat cytosol, nucleus, peroxisome 72.88 45.42
TraesCS4A01G201600.1 Wheat cytosol, nucleus, peroxisome 74.84 44.9
TraesCS4D01G102500.1 Wheat cytosol, nucleus, peroxisome, plastid 75.16 44.66
HORVU3Hr1G005430.1 Barley plastid 24.18 29.37
HORVU2Hr1G020530.1 Barley extracellular 12.42 29.01
HORVU3Hr1G005380.1 Barley cytosol, nucleus, plastid 30.72 28.48
HORVU7Hr1G101970.2 Barley cytosol, endoplasmic reticulum, nucleus 29.09 28.25
HORVU1Hr1G062590.3 Barley cytosol, extracellular, plastid 12.09 28.24
EES02585 Sorghum cytosol, nucleus, plastid 29.09 27.38
HORVU7Hr1G049290.1 Barley cytosol, extracellular, plastid 11.44 26.72
HORVU4Hr1G069550.1 Barley plastid 16.99 26.67
HORVU3Hr1G005450.2 Barley endoplasmic reticulum, nucleus, peroxisome 27.12 26.6
HORVU1Hr1G023820.1 Barley extracellular 16.01 26.49
OQU86433 Sorghum cytosol, nucleus, plastid 30.07 25.77
OQU88982 Sorghum plastid 20.59 25.0
HORVU3Hr1G005290.2 Barley plastid 30.39 24.87
HORVU6Hr1G082920.1 Barley plastid 31.05 24.8
OQU86440 Sorghum nucleus, plasma membrane, plastid 22.88 20.83
HORVU6Hr1G082930.1 Barley cytosol, mitochondrion, nucleus, plastid 22.55 19.6
HORVU3Hr1G005470.1 Barley plastid 19.61 18.87
HORVU3Hr1G012260.1 Barley cytosol, nucleus 20.59 17.5
HORVU3Hr1G005410.9 Barley mitochondrion 29.09 11.85
HORVU3Hr1G005400.7 Barley plasma membrane, plastid 26.47 7.76
Protein Annotations
Gene3D:3.30.40.10MapMan:35.2InterPro:7-in-absentia-prot_TRAF-domUniProt:A0A287NDR4GO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006464
GO:GO:0006511GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009056
GO:GO:0009987GO:GO:0016567GO:GO:0019538GO:GO:0046872EnsemblPlantsGene:HORVU4Hr1G016950EnsemblPlants:HORVU4Hr1G016950.1
InterPro:IPR008974InterPro:IPR013010InterPro:IPR013083PFAM:PF03145PFscan:PS51081PANTHER:PTHR10315
PANTHER:PTHR10315:SF46InterPro:SINA-likeSUPFAM:SSF49599InterPro:TRAF-likeUniParc:UPI000B46FC19InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAHSEG:seg::::
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287NDR4]
Coordinates
chrchr4H:-:71811612..71812622
Molecular Weight (calculated)
32439.2 Da
IEP (calculated)
7.459
GRAVY (calculated)
0.063
Length
306 amino acids
Sequence
(BLAST)
001: PSVVTTKTPA VAASIPVASA TPATLVNPPA TVKREPELGG VLEFDEQVAA AMIAVTPAEE ETVILEVKKK WLHCAACPAP LKRPVFKCGD GHVVCSDCGC
101: GGGANKHCDL CGRATTYTHV PYMDGLVGAY KVPCPYRNLG CARYIAYHSA ADHQAKCAHA PCYCFECAFQ GSTASLLRHL TEVSGRHCWP MEKIKYQISH
201: PLVVPASEHR LLLVAEEDGG VFLLAVGAGR GRAGVCPVTV VCVRGNVHAD ARPVYTGVLW VDGPPAAAGH LRSSIQLKGD VANCRVPGDV DMEHGRLHAH
301: VNPEML
Best Arabidopsis Sequence Match ( AT1G66660.2 )
(BLAST)
001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
Arabidopsis Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.