Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4B01G105700.1 | Wheat | cytosol, nucleus, peroxisome | 72.88 | 45.42 |
TraesCS4A01G201600.1 | Wheat | cytosol, nucleus, peroxisome | 74.84 | 44.9 |
TraesCS4D01G102500.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 75.16 | 44.66 |
HORVU3Hr1G005430.1 | Barley | plastid | 24.18 | 29.37 |
HORVU2Hr1G020530.1 | Barley | extracellular | 12.42 | 29.01 |
HORVU3Hr1G005380.1 | Barley | cytosol, nucleus, plastid | 30.72 | 28.48 |
HORVU7Hr1G101970.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 29.09 | 28.25 |
HORVU1Hr1G062590.3 | Barley | cytosol, extracellular, plastid | 12.09 | 28.24 |
EES02585 | Sorghum | cytosol, nucleus, plastid | 29.09 | 27.38 |
HORVU7Hr1G049290.1 | Barley | cytosol, extracellular, plastid | 11.44 | 26.72 |
HORVU4Hr1G069550.1 | Barley | plastid | 16.99 | 26.67 |
HORVU3Hr1G005450.2 | Barley | endoplasmic reticulum, nucleus, peroxisome | 27.12 | 26.6 |
HORVU1Hr1G023820.1 | Barley | extracellular | 16.01 | 26.49 |
OQU86433 | Sorghum | cytosol, nucleus, plastid | 30.07 | 25.77 |
OQU88982 | Sorghum | plastid | 20.59 | 25.0 |
HORVU3Hr1G005290.2 | Barley | plastid | 30.39 | 24.87 |
HORVU6Hr1G082920.1 | Barley | plastid | 31.05 | 24.8 |
OQU86440 | Sorghum | nucleus, plasma membrane, plastid | 22.88 | 20.83 |
HORVU6Hr1G082930.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 22.55 | 19.6 |
HORVU3Hr1G005470.1 | Barley | plastid | 19.61 | 18.87 |
HORVU3Hr1G012260.1 | Barley | cytosol, nucleus | 20.59 | 17.5 |
HORVU3Hr1G005410.9 | Barley | mitochondrion | 29.09 | 11.85 |
HORVU3Hr1G005400.7 | Barley | plasma membrane, plastid | 26.47 | 7.76 |
Protein Annotations
Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A287NDR4 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:HORVU4Hr1G016950 | EnsemblPlants:HORVU4Hr1G016950.1 |
InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
PANTHER:PTHR10315:SF46 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000B46FC19 | InterPro:Znf_RING/FYVE/PHD |
InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287NDR4]
Coordinates
chrchr4H:-:71811612..71812622
Molecular Weight (calculated)
32439.2 Da
IEP (calculated)
7.459
GRAVY (calculated)
0.063
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: PSVVTTKTPA VAASIPVASA TPATLVNPPA TVKREPELGG VLEFDEQVAA AMIAVTPAEE ETVILEVKKK WLHCAACPAP LKRPVFKCGD GHVVCSDCGC
101: GGGANKHCDL CGRATTYTHV PYMDGLVGAY KVPCPYRNLG CARYIAYHSA ADHQAKCAHA PCYCFECAFQ GSTASLLRHL TEVSGRHCWP MEKIKYQISH
201: PLVVPASEHR LLLVAEEDGG VFLLAVGAGR GRAGVCPVTV VCVRGNVHAD ARPVYTGVLW VDGPPAAAGH LRSSIQLKGD VANCRVPGDV DMEHGRLHAH
301: VNPEML
101: GGGANKHCDL CGRATTYTHV PYMDGLVGAY KVPCPYRNLG CARYIAYHSA ADHQAKCAHA PCYCFECAFQ GSTASLLRHL TEVSGRHCWP MEKIKYQISH
201: PLVVPASEHR LLLVAEEDGG VFLLAVGAGR GRAGVCPVTV VCVRGNVHAD ARPVYTGVLW VDGPPAAAGH LRSSIQLKGD VANCRVPGDV DMEHGRLHAH
301: VNPEML
001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
Arabidopsis Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.