Factsheet for TraesCS4D01G102500.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	80.58	84.52
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	83.5	84.31
HORVU4Hr1G016950.1	Barley	plastid	44.66	75.16
TraesCS7D01G107300.1	Wheat	nucleus	43.5	46.38
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	15.34	33.47
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	20.19	32.1
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	19.61	31.08
TraesCS6D01G324500.1	Wheat	plastid	20.78	30.66
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	7.96	30.6
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	17.86	29.02
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	15.53	28.99
EES02585	Sorghum	cytosol, nucleus, plastid	18.25	28.92
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	17.48	27.95
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	17.09	27.85
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	17.67	27.83
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	16.89	27.8
OQU86433	Sorghum	cytosol, nucleus, plastid	19.22	27.73
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	16.89	27.36
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	17.28	27.22
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	15.73	27.0
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	16.7	26.54
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	15.92	26.45
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	16.31	25.77
OQU88982	Sorghum	plastid	12.43	25.4
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	15.34	25.16
OQU86440	Sorghum	nucleus, plasma membrane, plastid	15.73	24.11
TraesCS3D01G512700.1	Wheat	cytosol	15.34	22.01
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	15.53	21.92
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	15.53	15.72
TraesCS3D01G017300.1	Wheat	plastid	18.84	14.48
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	18.84	14.29
TraesCS1D01G333100.2	Wheat	nucleus	20.0	12.76
TraesCS7D01G071600.1	Wheat	cytosol	15.34	11.69
TraesCS3D01G017400.1	Wheat	plastid	19.03	9.5

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS4D01G102500	EnsemblPlants:TraesCS4D01G102500.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:81392693..81394321

Molecular Weight (calculated)

53292.3 Da

IEP (calculated)

7.859

GRAVY (calculated)

-0.043

Length

515 amino acids

Sequence
(BLAST)

001: MADHKKPADQ QNKRQRVSEN AESSSKKFSI KEVVGSGVTG TRPFASPSPV AKAKPIAVVK PTAAMVAVTG PVATMAPASA EPSPVAKAKP TAATVTVTGP
101: VATMAPAPPS PVAMKMPTPA APSPVVTMAP ATAPPSPMAT MTPAQVAPSP VATKTPAPAE PSAVATMAPA QVVPSQVDTK TPAPAEPSAV ATKTPAPAAP
201: SPVATAMPAA VVNPPATVKH EPEDGGVLEL DEQVTAAMVA VAPAEEEAAI LEVKKKWLHC AACPAPLKRP IFMCGNGHVV CCACGGGGNG NGDGGANKHC
301: DLCGRATAYT HIPYMDGLVD AYQVPCPYRN FGCARSIAYH SAAEHLDKCA HAPCYCFECA FQGSPASLLR HLTEESGRHC WPMEKIKYQI CRPLVVPASE
401: HRLLLVAEED GRVFLLAVGA GRGAAGVRPV NVVCVRGNVD ADARPVYTGV LWVDGPPAAA GHLRSSFQLK GDVANCGVPG EVDMEHGRLH AHVNPEMLHG
501: ESKEIHLRIC ITKFW

Best Arabidopsis Sequence Match ( AT1G66660.2 )
(BLAST)

001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.