Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G116800.1 | Wheat | cytosol | 83.95 | 82.42 |
| TraesCS6D01G324500.1 | Wheat | plastid | 42.59 | 39.54 |
| TraesCS1D01G296000.1 | Wheat | nucleus, plasma membrane, plastid | 22.84 | 31.36 |
| EES02585 | Sorghum | cytosol, nucleus, plastid | 28.09 | 28.0 |
| TraesCS3D01G015700.1 | Wheat | cytosol, nucleus, peroxisome | 28.09 | 28.0 |
| TraesCS3D01G016200.1 | Wheat | cytosol, nucleus, peroxisome | 25.0 | 26.13 |
| TraesCS3D01G066200.1 | Wheat | cytosol, nucleus, plastid | 26.23 | 25.99 |
| TraesCS3D01G066100.1 | Wheat | cytosol, nucleus, plastid | 25.0 | 25.88 |
| TraesCS3D01G017100.1 | Wheat | cytosol, nucleus, plastid | 25.31 | 25.79 |
| TraesCS7D01G440300.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 25.0 | 25.63 |
| TraesCS3D01G016800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 24.07 | 24.84 |
| TraesCS7D01G071700.1 | Wheat | cytosol, plasma membrane, plastid | 10.19 | 24.63 |
| OQU86433 | Sorghum | cytosol, nucleus, plastid | 26.85 | 24.37 |
| TraesCS3D01G016900.1 | Wheat | nucleus, plasma membrane, plastid | 22.53 | 24.33 |
| TraesCS4D01G110300.1 | Wheat | cytosol, nucleus, plasma membrane | 20.68 | 24.28 |
| TraesCS3D01G055600.1 | Wheat | cytosol, nucleus, peroxisome | 23.15 | 23.66 |
| TraesCS7D01G129300.1 | Wheat | endoplasmic reticulum, nucleus, peroxisome | 22.84 | 22.98 |
| TraesCS7D01G107300.1 | Wheat | nucleus | 33.95 | 22.77 |
| OQU88982 | Sorghum | plastid | 17.59 | 22.62 |
| TraesCS3D01G028300.1 | Wheat | nucleus, peroxisome, plastid | 22.53 | 22.39 |
| TraesCS3D01G028400.1 | Wheat | nucleus, plasma membrane, plastid | 21.6 | 21.6 |
| TraesCS3D01G016100.1 | Wheat | nucleus, peroxisome, plastid | 21.6 | 21.41 |
| TraesCS3D01G017000.1 | Wheat | cytosol, nucleus, plastid | 22.84 | 20.27 |
| TraesCS4D01G102500.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 32.1 | 20.19 |
| OQU86440 | Sorghum | nucleus, plasma membrane, plastid | 20.06 | 19.35 |
| TraesCS3D01G512700.1 | Wheat | cytosol | 21.3 | 19.22 |
| TraesCS3D01G017900.1 | Wheat | cytosol, nucleus, plasma membrane | 19.44 | 12.38 |
| TraesCS7D01G071600.1 | Wheat | cytosol | 24.38 | 11.69 |
| TraesCS3D01G017300.1 | Wheat | plastid | 22.53 | 10.9 |
| TraesCS3D01G018000.1 | Wheat | nucleus, peroxisome, plasma membrane | 21.6 | 10.31 |
| TraesCS1D01G333100.2 | Wheat | nucleus | 23.77 | 9.54 |
| TraesCS3D01G017400.1 | Wheat | plastid | 22.22 | 6.98 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF46 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3D01G100700 | EnsemblPlants:TraesCS3D01G100700.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3D:-:53389445..53390512
Molecular Weight (calculated)
34357.0 Da
IEP (calculated)
6.608
GRAVY (calculated)
-0.067
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGKRKNAVD GKTPLSKGRP GRKSVAAPSP AAVDAPALAA SGAKVLAGGA VAVAGPEGEV VKLLDSDVPK AVLRCDECHG PLKPPVYQCS RMHHVACGDC
101: GGECRPCAGL AASAVVYVQN AYLDTLFGYT KVACPYKKHG CASSVAYRDA AAHAAACACA PCSCPECLFE GSPADLVRHL TEESGRHAWG ARKITYGTDH
201: RYVFDELDSE EICEELLVAE EDDGVFLLHI HRVELYHHVA LACVRNKAAA GPVYSSSVAV EGPPAKGLVV KLETKVVASC PVPTELVYDD YEALPVLPRM
301: LHERDESREL HVRVCISKTQ SISE
101: GGECRPCAGL AASAVVYVQN AYLDTLFGYT KVACPYKKHG CASSVAYRDA AAHAAACACA PCSCPECLFE GSPADLVRHL TEESGRHAWG ARKITYGTDH
201: RYVFDELDSE EICEELLVAE EDDGVFLLHI HRVELYHHVA LACVRNKAAA GPVYSSSVAV EGPPAKGLVV KLETKVVASC PVPTELVYDD YEALPVLPRM
301: LHERDESREL HVRVCISKTQ SISE
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.