CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88982	Sorghum	plastid	31.38	40.48
OQU86433	Sorghum	cytosol, nucleus, plastid	42.15	38.38
OQU86430	Sorghum	cytosol, nucleus, plastid	27.08	33.33
KXG32025	Sorghum	cytosol	30.77	32.05
EES00397	Sorghum	plastid	30.77	31.06
TraesCS3B01G053300.1	Wheat	plastid	18.77	29.9
EES00400	Sorghum	cytosol	30.15	29.88
TraesCS3A01G065900.1	Wheat	cytosol	20.62	29.26
HORVU4Hr1G016950.1	Barley	plastid	27.38	29.09
TraesCS3A01G065800.1	Wheat	cytosol	17.54	29.08
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.0	28.09
EES00395	Sorghum	cytosol, nucleus, plastid	29.23	27.78
KXG32022	Sorghum	nucleus	28.0	27.0
TraesCS3B01G116800.1	Wheat	cytosol	26.77	26.36
KXG32016	Sorghum	cytosol	25.23	25.47
TraesCS6B01G375600.1	Wheat	plastid	26.46	24.78
TraesCS6D01G324500.1	Wheat	plastid	26.46	24.64
TraesCS6A01G343600.1	Wheat	plastid	25.85	24.21
HORVU6Hr1G082920.1	Barley	plastid	27.08	22.98
OQU86440	Sorghum	nucleus, plasma membrane, plastid	23.38	22.62
TraesCS6B01G375700.1	Wheat	plastid	24.0	22.03
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	30.15	19.96
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	20.62	19.03
TraesCS7B01G197600.1	Wheat	cytosol	14.77	18.9
TraesCS7D01G107300.1	Wheat	nucleus	28.0	18.84
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	28.92	18.25
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	28.31	18.04
TraesCS3A01G020900.1	Wheat	cytosol	16.31	17.79
TraesCSU01G040400.1	Wheat	cytosol	16.31	17.79
TraesCS3B01G079200.1	Wheat	cytosol, plastid	24.92	13.64

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:8079033	UniProt:C5XE56	EnsemblPlants:EES02585	ProteinID:EES02585
ProteinID:EES02585.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF33	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G091500
SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI0001A84C51	RefSeq:XP_002457465.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH

Description

hypothetical protein

Coordinates

chr3:-:7956008..7958272

Molecular Weight (calculated)

34833.2 Da

IEP (calculated)

8.281

GRAVY (calculated)

-0.021

Length

325 amino acids

Sequence
(BLAST)

001: MADGEEHQNK RLLTASGVGS INKKAKALSS VTLKEESEGV VAQGGRASHR ARGVVAVAEQ ANPPMELPRI INIGLQPQLL HCAVTDCSRP LKPPVFKCAA
101: GHRLCNNCRG QGRAGHCRKC GRDTTFVYCG PDLDVYIGGA MVPCPFVVFG CGSSVAYHEM DAHRDACAYA PCRCPQCPFM ASPAVLRDHL ATHHAWPVHG
201: VPSYGAHFHV GAAVSEPPHR LLVVEGDEQR LFVLSVRARG AADIWAVSLA CVRASAKAGP RYVYTIWACP PTRERSWVGM EADVPSCAVP GAAVDEGMAL
301: CVLPELLVGP SKEIHLKVRM RVVQP

Best Arabidopsis Sequence Match ( AT5G62800.2 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.