Factsheet for TraesCS3A01G065800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G065900.1	Wheat	cytosol	51.02	43.67
TraesCS7D01G107300.1	Wheat	nucleus	63.78	25.88
TraesCS3B01G079200.1	Wheat	cytosol, plastid	77.55	25.59
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	65.82	25.29
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	32.65	21.62
TraesCS6A01G343600.1	Wheat	plastid	37.24	21.04
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	34.18	20.24
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	34.18	20.24
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	33.67	20.0
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	29.08	18.63
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	31.12	18.6
EES02585	Sorghum	cytosol, nucleus, plastid	29.08	17.54
OQU86433	Sorghum	cytosol, nucleus, plastid	31.12	17.09
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	27.55	16.88
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	18.88	16.67
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	29.59	16.62
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	26.02	16.09
TraesCS7A01G138000.1	Wheat	nucleus	25.0	15.51
TraesCS3A01G505400.1	Wheat	cytosol	27.55	15.04
OQU88982	Sorghum	plastid	18.88	14.68
OQU86440	Sorghum	nucleus, plasma membrane, plastid	24.49	14.29
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	23.47	13.03
TraesCS2A01G361500.1	Wheat	cytosol	19.9	12.34
TraesCS3A01G505500.1	Wheat	cytosol	19.39	11.91
TraesCS3A01G020900.1	Wheat	cytosol	17.35	11.41
TraesCS3A01G028600.1	Wheat	plastid	33.16	9.39
TraesCS3A01G028000.1	Wheat	plasma membrane	30.61	9.24
TraesCS3A01G028500.1	Wheat	plastid	33.16	6.3

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G065800	EnsemblPlants:TraesCS3A01G065800.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH

Description

No Description!

Coordinates

chr3A:-:38628107..38628697

Molecular Weight (calculated)

21430.7 Da

IEP (calculated)

6.766

GRAVY (calculated)

-0.045

Length

196 amino acids

Sequence
(BLAST)

001: MDVMVDVYTV ECLYKRFGCP TSMAYHSVAD HAASCRHAPC YCFDCRFDSS PVSLVGHLTA RHSWPVEKIQ YEVAKSFVVP ASEEDKRRLL VAEDNCVFLL
101: AVGAGRDPGG RRPVNVVCVR GNAKPLYTGV LWVDGPPAAP GQPLTSSFQL KATVASCSVP GEVDMEQGWL HAHVDPNMMH GESGELHLRL CLTKLS

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.