Factsheet for TraesCS3A01G065900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G065800.1	Wheat	cytosol	43.67	51.02
TraesCS7D01G107300.1	Wheat	nucleus	62.01	29.4
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	55.02	24.71
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	22.71	23.42
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	28.38	21.96
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	27.95	20.91
EES02585	Sorghum	cytosol, nucleus, plastid	29.26	20.62
TraesCS7A01G138000.1	Wheat	nucleus	28.38	20.57
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	29.69	20.54
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	29.26	20.24
OQU86433	Sorghum	cytosol, nucleus, plastid	31.0	19.89
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	27.51	19.87
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	27.51	19.69
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	27.95	19.39
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	28.38	18.62
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	26.2	18.29
OQU88982	Sorghum	plastid	20.09	18.25
TraesCS3A01G505400.1	Wheat	cytosol	27.51	17.55
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	26.64	17.28
TraesCS6A01G343600.1	Wheat	plastid	25.76	17.0
OQU86440	Sorghum	nucleus, plasma membrane, plastid	24.45	16.67
TraesCS3A01G020900.1	Wheat	cytosol	20.09	15.44
TraesCS3A01G505500.1	Wheat	cytosol	21.4	15.36
TraesCS2A01G361500.1	Wheat	cytosol	20.96	15.19
TraesCS3A01G028000.1	Wheat	plasma membrane	27.51	9.71
TraesCS3A01G028600.1	Wheat	plastid	27.07	8.96
TraesCS3A01G028500.1	Wheat	plastid	29.26	6.49

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G065900	EnsemblPlants:TraesCS3A01G065900.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH

Description

No Description!

Coordinates

chr3A:-:38657457..38658404

Molecular Weight (calculated)

24493.5 Da

IEP (calculated)

7.585

GRAVY (calculated)

-0.099

Length

229 amino acids

Sequence
(BLAST)

001: MAAGATEDVE LAILALPKKS FHCAACLCPL KPPVFRCENE HFVCQACGGA NKHCGPCGRE VSYTRSRFMD GVVDAYKVPC LYKGHGCAMD DIPYHSAADH
101: KASCKHAPCY CFDCRFVGSP AKLVRHLASP SGAHAWPVEK IKGNADADAD AKPLYTGVLW VDGPPAPPRQ PLGCSFRLKA TVASCSVPGV VDMDQGWLHA
201: HVSPNMLHGH GGESGDCELH LRLCLTKLA

Best Arabidopsis Sequence Match ( AT1G66660.2 )
(BLAST)

001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.