Factsheet for TraesCS3A01G505400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G512700.1	Wheat	cytosol	96.94	96.94
TraesCS3B01G572900.1	Wheat	cytosol	89.14	88.4
TraesCS2A01G361500.1	Wheat	cytosol	40.11	45.57
TraesCS7A01G138000.1	Wheat	nucleus	39.28	44.62
TraesCS3A01G505500.1	Wheat	cytosol	38.16	42.95
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	36.21	41.01
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	35.93	40.31
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	24.79	40.09
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	37.33	37.96
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	24.79	30.07
KXG32022	Sorghum	nucleus	28.13	29.97
EES00395	Sorghum	cytosol, nucleus, plastid	28.13	29.53
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	27.58	29.38
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	27.02	29.31
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	26.74	29.09
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	29.25	28.61
TraesCS3A01G065800.1	Wheat	cytosol	15.04	27.55
TraesCS3A01G065900.1	Wheat	cytosol	17.55	27.51
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	24.79	26.89
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	22.28	26.14
KXG32016	Sorghum	cytosol	23.4	26.09
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	23.4	25.61
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	22.84	23.5
TraesCS3A01G020900.1	Wheat	cytosol	16.16	19.46
TraesCS6A01G343600.1	Wheat	plastid	18.38	19.02
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	22.01	15.49
TraesCS3A01G028000.1	Wheat	plasma membrane	23.12	12.79
TraesCS3A01G028600.1	Wheat	plastid	22.01	11.42
TraesCS3A01G028500.1	Wheat	plastid	20.61	7.17

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G505400	EnsemblPlants:TraesCS3A01G505400.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:-:727224469..727225651

Molecular Weight (calculated)

36950.6 Da

IEP (calculated)

7.678

GRAVY (calculated)

0.074

Length

359 amino acids

Sequence
(BLAST)

001: MGLGGGGGEG VLAVVPMEAI PMAEPQIVAG GKIVGLRADL LDCHNCRLPL KPPIFKCDAE HLVCSSCRGL HGEACGGRAA VHSALADIFA AAATVPCGYE
101: RYGCDAGGVV YHEAADHRRA CQHAPCCCPD RAGAAGIGGC GFVGSRQDLL DHISGPDHSR PIIVVRYGQP WNLSLPLSRR WHILVGEEDK AVAAAAGAER
201: HRNLFLVSLG ERGATTAVSL VCVRVDGTAP SAPQFACKLA VESDGCRLTL ESPLVCSSSL SGGLPAEVKC LPVPKDFLSG DSVPLSIHIE KLPAPPAPPL
301: GLGVAPACTS PVAATPPPCP AATIPPSRPS SGSSDNVAVK TVITDQSYKK RKSANPRKL

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.