Factsheet for TraesCS6A01G343600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G324500.1	Wheat	plastid	96.54	95.99
TraesCS6B01G375600.1	Wheat	plastid	94.81	94.81
HORVU6Hr1G082920.1	Barley	plastid	89.91	81.46
TraesCS3A01G065800.1	Wheat	cytosol	21.04	37.24
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	23.63	26.8
EES02585	Sorghum	cytosol, nucleus, plastid	24.21	25.85
TraesCS3A01G065900.1	Wheat	cytosol	17.0	25.76
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	21.04	24.66
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	23.34	24.47
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	22.48	23.64
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	22.48	23.57
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	23.63	23.5
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	21.33	23.34
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	14.41	22.52
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	21.04	22.26
OQU86433	Sorghum	cytosol, nucleus, plastid	22.48	21.85
TraesCS7A01G138000.1	Wheat	nucleus	19.6	21.52
OQU88982	Sorghum	plastid	15.56	21.43
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	19.31	20.94
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	30.55	20.78
OQU86440	Sorghum	nucleus, plasma membrane, plastid	19.6	20.24
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	19.6	19.26
TraesCS3A01G505500.1	Wheat	cytosol	17.0	18.5
TraesCS3A01G505400.1	Wheat	cytosol	19.02	18.38
TraesCS2A01G361500.1	Wheat	cytosol	16.71	18.35
TraesCS3A01G020900.1	Wheat	cytosol	14.99	17.45
TraesCS3A01G028000.1	Wheat	plasma membrane	23.63	12.63
TraesCS3A01G028600.1	Wheat	plastid	24.21	12.14
TraesCS3A01G028500.1	Wheat	plastid	22.77	7.66

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS6A01G343600	EnsemblPlants:TraesCS6A01G343600.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6A:-:577780424..577782282

Molecular Weight (calculated)

37256.6 Da

IEP (calculated)

7.532

GRAVY (calculated)

-0.296

Length

347 amino acids

Sequence
(BLAST)

001: MGGKRKSTAD VKTPPTVGRR PGRPRKNTPP EAIRRPGRPR KSEPGVEVPL ARSPVPAQTL PSPRSEREEE ANGGLLELAR GAAAIAAAEE EEEQVRMRCD
101: LCHGPLRPPI YQCTSVQHVA CRDCGADECR PCGGDPAAVF VHNAQLDALF GYIRVPCPFR KFGCASSVAY RDLAAHETAC TWAPCACAEC GYKGPPSGLL
201: RHLTELSGRH AWTAHRITYG MDHRFAVPVP ESSEQQCEDH GLLIAEDGAV FLVAVGGAGG VRRVTVVCVR GNVGTGPVYS SSVEVAGPDE ARRLKLEKKV
301: AASCSAPVEF DVLAQPECDT VPVYPEMLHG EELHLCIRIG KTKIICS

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.