Factsheet for TraesCS3A01G028800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	66.88	90.68
TraesCS3B01G026900.1	Wheat	nucleus	82.5	82.5
HORVU3Hr1G005430.1	Barley	plastid	63.75	80.95
TraesCS7A01G138000.1	Wheat	nucleus	76.25	77.22
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	68.12	68.77
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	45.31	65.32
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	56.25	50.99
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	40.0	37.98
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	43.12	37.6
EES00395	Sorghum	cytosol, nucleus, plastid	38.44	35.96
TraesCS3A01G505400.1	Wheat	cytosol	40.31	35.93
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	35.62	34.44
KXG32022	Sorghum	nucleus	35.31	33.53
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	29.06	31.42
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	31.88	31.1
TraesCS2A01G361500.1	Wheat	cytosol	30.62	31.01
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	31.88	30.91
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	31.88	30.82
KXG32016	Sorghum	cytosol	30.94	30.75
TraesCS3A01G505500.1	Wheat	cytosol	29.38	29.47
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	26.56	27.78
TraesCS3A01G065800.1	Wheat	cytosol	16.88	27.55
TraesCS3A01G065900.1	Wheat	cytosol	19.69	27.51
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	28.12	25.79
TraesCS3A01G020900.1	Wheat	cytosol	20.31	21.81
TraesCS6A01G343600.1	Wheat	plastid	20.94	19.31
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	26.56	16.67
TraesCS3A01G028600.1	Wheat	plastid	28.75	13.29
TraesCS3A01G028000.1	Wheat	plasma membrane	26.56	13.1
TraesCS3A01G028500.1	Wheat	plastid	28.44	8.82

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G028800	EnsemblPlants:TraesCS3A01G028800.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:-:15302807..15304090

Molecular Weight (calculated)

33429.2 Da

IEP (calculated)

6.848

GRAVY (calculated)

0.061

Length

320 amino acids

Sequence
(BLAST)

001: MEGAESCGKS VTSEEEAKPE CEEGEVMMMQ EQDGGAVASA PAPAQIDVRM DVALLHCQAC LLPLKPPVFK CEAAGHVVCC FCRAGHAGLC SRATAHCGEL
101: DVVVGAVKVP CPYKVFGCER YVVYHDAADH QRACQCAPCS CPEPGCAFVG SRAALLGHFA AGHQRPAVTV RYGRAWNLSF SLAHRWHALV GDEDRSLFLL
201: SLGPLGAASA VSLLCVRPDG EAAAAPRFRC KLSVERQAGD DKDNLVLMAS AVGSSALSTG APAPGQGMFL AVPQELISGD TLTLSLRVDL IRPAAGAGGA
301: PKVPSQLLHR RPGRRGGCSD

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.