Factsheet for TraesCS1D01G296000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	nucleus, plasma membrane, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	91.95	68.24
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	90.68	66.88
TraesCS3B01G026900.1	Wheat	nucleus	90.25	66.56
HORVU3Hr1G005430.1	Barley	plastid	70.76	66.27
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	72.88	54.43
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	70.76	53.18
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	61.86	40.0
TraesCS3D01G512700.1	Wheat	cytosol	49.15	32.31
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	44.92	31.45
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	46.61	29.97
KXG32022	Sorghum	nucleus	41.53	29.08
EES00395	Sorghum	cytosol, nucleus, plastid	41.1	28.36
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	38.14	27.69
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	38.14	27.52
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	38.14	27.52
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	35.59	26.84
KXG32016	Sorghum	cytosol	36.44	26.71
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	35.59	26.5
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	30.51	26.09
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	33.47	24.38
TraesCS7D01G071600.1	Wheat	cytosol	69.49	24.26
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	33.47	24.23
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	32.2	23.6
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	31.36	22.84
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	28.39	22.33
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	29.24	22.26
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	10.59	18.66
TraesCS6D01G324500.1	Wheat	plastid	26.69	18.05
TraesCS7D01G107300.1	Wheat	nucleus	35.17	17.18
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	33.47	15.34
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	27.54	12.77
TraesCS3D01G017300.1	Wheat	plastid	31.78	11.19
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	27.97	9.72
TraesCS1D01G333100.2	Wheat	nucleus	28.39	8.3
TraesCS3D01G017400.1	Wheat	plastid	31.78	7.27

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF33	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS1D01G296000	EnsemblPlants:TraesCS1D01G296000.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:394274522..394275608

Molecular Weight (calculated)

24680.9 Da

IEP (calculated)

7.556

GRAVY (calculated)

0.250

Length

236 amino acids

Sequence
(BLAST)

001: MMMQEQDGGA AAAAAEAMAP AQIDVRMDVA LLHCQACLLP LKPPVKCEAA GHVVCCFCRA GHAALCSRAS AHCGELDVVV GAVKVPCPYK VFGCERYLVY
101: HDTADHRCAP CSCPEPGCAF VGSRATLLGH FAAGQQRPAV TIRYGRAWNL SFSLSHRWHA LVGDEDRSLF LVSLGPLGAA TAVSLLCVRP DGEAAAAPRF
201: RCKLSVERLA GDGKDNLVLM ASAVSSSSLS TGAPAT

Best Arabidopsis Sequence Match ( AT5G62800.2 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.