Factsheet for TraesCS3D01G028300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	nucleus, peroxisome, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	84.05	84.57
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	81.9	83.18
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	81.9	81.65
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	72.7	80.89
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	72.39	80.55
TraesCSU01G207000.1	Wheat	extracellular, plastid	30.98	80.16
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	74.54	79.41
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	79.45	79.2
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	79.14	78.9
TraesCSU01G206900.1	Wheat	cytosol	38.34	78.62
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	78.53	78.29
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	78.22	77.98
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	78.22	77.98
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	75.46	76.64
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	74.54	74.31
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	67.79	66.97
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	62.58	62.77
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	57.98	60.38
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	57.67	57.49
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	45.09	46.37
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	17.79	43.28
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	42.64	43.17
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	38.34	41.67
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	34.66	40.94
Os01t0122701-00	Rice	plastid	11.96	38.61
EES00397	Sorghum	plastid	37.12	37.58
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	24.23	33.47
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	31.9	32.91
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	30.06	31.61
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	30.06	30.82
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.91	28.98
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	30.98	27.67
TraesCS3D01G512700.1	Wheat	cytosol	28.53	25.91
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	22.39	22.53
TraesCS6D01G324500.1	Wheat	plastid	23.31	21.78
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	30.98	19.84
TraesCS7D01G107300.1	Wheat	nucleus	26.07	17.6
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	34.97	16.79
TraesCS3D01G017300.1	Wheat	plastid	34.36	16.72
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	25.77	16.31
TraesCS7D01G071600.1	Wheat	cytosol	28.83	13.91
TraesCS1D01G333100.2	Wheat	nucleus	32.52	13.14
TraesCS3D01G017400.1	Wheat	plastid	34.36	10.85

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G028300
EnsemblPlants:TraesCS3D01G028300.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:-:9880847..9881924

Molecular Weight (calculated)

34077.2 Da

IEP (calculated)

7.872

GRAVY (calculated)

0.053

Length

326 amino acids

Sequence
(BLAST)

001: MQGAAVDGRS RALPDKADTS SKKARQDLPD GHMKQEAAGG GDGGAIVTAA YNPRVELAVR IDKQVLHCPL CTLPFKPPVF QCKAGHPACG GCVAQLPFGQ
101: CMACVDSGGF FDPCPALDAV VSSTRIGCPN AGCQWYVTYH EVAEHQKACP HTPCHCTEPG CGYVGAPQAL AGHINTVHSA PLRAVQYGKV SQLQLPVSTP
201: RLVLLGDDNR VFLLTVGALG AGAAVVSVVC ARARAATRPR FTCKMWVNLG PPPAAAANCG KEDMVLVDMH IRSSSSPGAV AAADEPTFLP VPRMYLVPAA
301: ARDGTSMEVP LHIRIDKLSP LSDALV

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.