Factsheet for TraesCSU01G222300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G207000.1	Wheat	extracellular, plastid	41.18	100.0
TraesCSU01G206900.1	Wheat	cytosol	48.37	93.08
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	94.12	88.07
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	94.12	88.07
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	93.79	87.77
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	93.46	87.46
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	82.68	86.35
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	79.41	74.54
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	74.84	70.68
TraesCSU01G045700.1	Wheat	nucleus, peroxisome, plastid	76.14	69.55
TraesCSU01G043600.1	Wheat	nucleus	75.82	69.25
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	64.38	59.7
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	62.09	57.23
TraesCSU01G046200.1	Wheat	nucleus, plasma membrane, plastid	39.87	40.26
Os01t0122701-00	Rice	plastid	12.42	37.62
TraesCSU01G178600.1	Wheat	nucleus, plasma membrane, plastid	35.95	35.71
EES00397	Sorghum	plastid	33.33	31.68
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	19.61	27.03
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	19.61	27.03
TraesCSU01G043700.1	Wheat	cytosol	26.8	25.95
TraesCSU01G046100.1	Wheat	cytosol	26.47	25.71
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	28.1	24.09
TraesCSU01G040400.1	Wheat	cytosol	15.03	15.44
TraesCSU01G166800.1	Wheat	plastid	33.33	14.74
TraesCSU01G166900.1	Wheat	plasma membrane	31.05	9.99

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974	InterPro:IPR013083
PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCSU01G222300
EnsemblPlants:TraesCSU01G222300.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:+:328827898..328829724

Molecular Weight (calculated)

32439.5 Da

IEP (calculated)

8.439

GRAVY (calculated)

0.087

Length

306 amino acids

Sequence
(BLAST)

001: MQGAAAAAER RSRASPDKAD ESSKKARLDL PDGHMKQEAA GGGDGGSIIG AAYIQRVELA VRIDKQVLHC PLCTLPFKPP VFQCKAGHPA CSGCVALLPF
101: RQCKACVDGG GFFDPCPTLD ALVSSTRIGC PNVGCQWYVT YHEVTEHQKA LAGHLRTVHL VPVRAVQYGK VNKLQLPVST MRLVLLGDDN CVFLKTVGAL
201: GAGVTAVSVV CARARAARRP RFTCKMWVNL ETPPAAVANC GKEDVVLVDM QMRSSSSPGA VVAAGEPTFL TVPPMYLVPA AGDGASMEVP LHIRIDKLSP
301: WSDALV

Best Arabidopsis Sequence Match ( AT5G37890.1 )
(BLAST)

001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.