Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G017400.1 | Wheat | plastid | 93.48 | 86.14 |
| TraesCS3A01G028500.1 | Wheat | plastid | 93.17 | 85.85 |
| HORVU3Hr1G005400.7 | Barley | plasma membrane, plastid | 78.55 | 71.55 |
| TraesCSU01G166800.1 | Wheat | plastid | 44.9 | 61.71 |
| TraesCSU01G046200.1 | Wheat | nucleus, plasma membrane, plastid | 13.14 | 41.25 |
| TraesCSU01G178600.1 | Wheat | nucleus, plasma membrane, plastid | 12.3 | 37.99 |
| TraesCSU01G045700.1 | Wheat | nucleus, peroxisome, plastid | 12.62 | 35.82 |
| TraesCSU01G044900.1 | Wheat | cytosol, nucleus, peroxisome | 12.3 | 35.24 |
| TraesCSU01G043600.1 | Wheat | nucleus | 12.3 | 34.93 |
| TraesCSU01G207000.1 | Wheat | extracellular, plastid | 4.21 | 31.75 |
| Os01t0122701-00 | Rice | plastid | 3.36 | 31.68 |
| TraesCSU01G222300.1 | Wheat | cytosol, peroxisome, plastid | 9.99 | 31.05 |
| TraesCSU01G206900.1 | Wheat | cytosol | 4.94 | 29.56 |
| TraesCSU01G040300.1 | Wheat | cytosol, nucleus, plastid | 6.83 | 29.28 |
| TraesCSU01G177200.1 | Wheat | cytosol, nucleus, plastid | 6.83 | 29.28 |
| EES00397 | Sorghum | plastid | 9.67 | 28.57 |
| TraesCSU01G046100.1 | Wheat | cytosol | 9.04 | 27.3 |
| TraesCSU01G043700.1 | Wheat | cytosol | 9.04 | 27.22 |
| TraesCSU01G050700.1 | Wheat | cytosol, nucleus, plastid | 9.25 | 24.65 |
| TraesCSU01G040400.1 | Wheat | cytosol | 5.99 | 19.13 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF46 | InterPro:SINA-like |
| SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCSU01G166900 | EnsemblPlants:TraesCSU01G166900.1 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:244511720..244516550
Molecular Weight (calculated)
102570.0 Da
IEP (calculated)
5.970
GRAVY (calculated)
0.001
Length
951 amino acids
Sequence
(BLAST)
(BLAST)
001: MADFEINKAL TLWLVGRFSC ETEALEFEGG VSIPVRPLVK SVLGIPSGPI PVVQAPYSHY YSTKVRKAKE LAEEMCGITE EEPFCTAFMM VILAIYLAPN
101: TTMLVNRSLL GAAQKVGSLR QMDWCGFVAD YLMKGLMEFK ESDAPFVLLK GCVHILSVIF IDHVKHAEFQ VPNGFPRLRV VTTAHNKWVT SHPFGSLLVR
201: RLEESVYAPV LNNGNGNIVE GGECADSDTN TDALANLPAT DNDQNNQHLV SAGPASLSIV LALETSAQSA GTNHLHGAMG SNLAVHANPR SNGKQGSAMD
301: GGSPPSRSAK RPRKSGSALY RCSPRLIPQI VELLSEEQKG FVRKIGFGSL LSMADFEMNK ALTLWLVGKF SCDTNALEFG GGLSIPVRPL VKSVLGIPSG
401: PIQVVQGLEV DYGFFSQYCS VNFKNARKLA EEMCSITEEE PFCIAFMMTI LAIYLAPNTT VLVNRSFLGA AEQVGSLKQM DWCGFVADYL FKGIREFKES
501: GAPFGCLKGC VHILSVIFID LVKHAAFEVP NGFPRLGFVA TEHNKWVASH PFGSLLVRRL EESVYAPVLN NGNGNIVEGR ECADSDTDTD TLSNQSATDN
601: DQNNQHPVSP GPGSLFIVTG LETSARSAEH IIFPSGEQLQ SAGPSSEPFS AQILNGLEVL AAAAESRNRD SPSTMEKHDR SAKRARVEPP NSGQMVRAGE
701: ATIRMDMSLF SCRVCSHPVK PPVFQCNVGH LACGRCLAEL PGEQCQMCEH GGDFSPCPVM DDVVLSSTMK CSHDGCHIYV PYHELDDHQS TCPHGPCFCT
801: ETGCSFAGAP AALLGHLAAL HSVPVHKVHY GSVHQLRVSE PRFLLHTEED DSAFLLAVGV LGMATVASVV CLRAGASPEP RYAVKLRANG PPPPSSAAGS
901: ILLEMDAVSS CARPGEVEVE ELPAFLVVPP AYLVDCGAYK EVCLDVRIDR M
101: TTMLVNRSLL GAAQKVGSLR QMDWCGFVAD YLMKGLMEFK ESDAPFVLLK GCVHILSVIF IDHVKHAEFQ VPNGFPRLRV VTTAHNKWVT SHPFGSLLVR
201: RLEESVYAPV LNNGNGNIVE GGECADSDTN TDALANLPAT DNDQNNQHLV SAGPASLSIV LALETSAQSA GTNHLHGAMG SNLAVHANPR SNGKQGSAMD
301: GGSPPSRSAK RPRKSGSALY RCSPRLIPQI VELLSEEQKG FVRKIGFGSL LSMADFEMNK ALTLWLVGKF SCDTNALEFG GGLSIPVRPL VKSVLGIPSG
401: PIQVVQGLEV DYGFFSQYCS VNFKNARKLA EEMCSITEEE PFCIAFMMTI LAIYLAPNTT VLVNRSFLGA AEQVGSLKQM DWCGFVADYL FKGIREFKES
501: GAPFGCLKGC VHILSVIFID LVKHAAFEVP NGFPRLGFVA TEHNKWVASH PFGSLLVRRL EESVYAPVLN NGNGNIVEGR ECADSDTDTD TLSNQSATDN
601: DQNNQHPVSP GPGSLFIVTG LETSARSAEH IIFPSGEQLQ SAGPSSEPFS AQILNGLEVL AAAAESRNRD SPSTMEKHDR SAKRARVEPP NSGQMVRAGE
701: ATIRMDMSLF SCRVCSHPVK PPVFQCNVGH LACGRCLAEL PGEQCQMCEH GGDFSPCPVM DDVVLSSTMK CSHDGCHIYV PYHELDDHQS TCPHGPCFCT
801: ETGCSFAGAP AALLGHLAAL HSVPVHKVHY GSVHQLRVSE PRFLLHTEED DSAFLLAVGV LGMATVASVV CLRAGASPEP RYAVKLRANG PPPPSSAAGS
901: ILLEMDAVSS CARPGEVEVE ELPAFLVVPP AYLVDCGAYK EVCLDVRIDR M
001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.