Factsheet for TraesCSU01G166800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plasma membrane, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G028600.1	Wheat	plastid	93.93	93.93
TraesCS3D01G017300.1	Wheat	plastid	87.43	90.3
HORVU3Hr1G005410.9	Barley	mitochondrion	75.14	69.24
TraesCSU01G166900.1	Wheat	plasma membrane	61.71	44.9
TraesCSU01G046200.1	Wheat	nucleus, plasma membrane, plastid	18.06	41.25
TraesCSU01G045700.1	Wheat	nucleus, peroxisome, plastid	18.06	37.31
TraesCSU01G178600.1	Wheat	nucleus, plasma membrane, plastid	16.33	36.69
TraesCSU01G043600.1	Wheat	nucleus	17.63	36.42
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	16.76	34.94
TraesCSU01G207000.1	Wheat	extracellular, plastid	6.07	33.33
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	14.74	33.33
Os01t0122701-00	Rice	plastid	4.77	32.67
TraesCSU01G206900.1	Wheat	cytosol	7.37	32.08
EES00397	Sorghum	plastid	14.6	31.37
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	9.97	31.08
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	9.97	31.08
TraesCSU01G046100.1	Wheat	cytosol	13.01	28.57
TraesCSU01G043700.1	Wheat	cytosol	12.72	27.85
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	13.87	26.89
TraesCSU01G040400.1	Wheat	cytosol	8.24	19.13

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCSU01G166800	EnsemblPlants:TraesCSU01G166800.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:244505609..244508710

Molecular Weight (calculated)

74886.1 Da

IEP (calculated)

7.352

GRAVY (calculated)

-0.092

Length

692 amino acids

Sequence
(BLAST)

001: MRSNPATPAN PSRRGKRGHY NSANKSRRKG DRAYMCSPHL IPPIMKRLSD EQRGFVEKIG FGSLLSMADF EMDKALTLWL IDRFSCDAEA LEFDGGVSVP
101: VRPLVASVLG IPSGPIQVVA GLHVGDALRT RYRCLKGKNA EKLAEEMRGM TEEEPFCMAF MMVILAVYLA PNTTKLVNRY LFGAAQQVGS LKQMDWCGFV
201: ADYLFRGIRK FKESDAPFVF VKGCVHILNV IFIDLVKHAA FEVPNGFPRL GFVTTEHNKW VASHPFGSLL VRRLEESVYA PVLNNMGDGN IVEGGTCADS
301: DTNTDALANQ FAITVTHQNN PHPISAYPGP ARTTPDVTSL ASVEHVALET SARSAVYSFN THRVEGSVFL EERVVFPRSR EQLQSGGPSS PFSAQIAEKT
401: QLAPEATLGR SRGSPKDDRT PERARVELPN SGQVKRAGEG TIRMDMSLLS CRVCYHPVKP PVFQCNVGHL ACGTCLAELP GEQCPICEHG GGFSRCPVMD
501: DVVLSSEMKC SYGGCQSYVP YHELDGHQRV CPHAPCFCTE PGCGFCGPPP ALLGHLTAVH SVPVQKVQYG NVHRLRLSEA RCLLHAEEDD SVFLLAVGAV
601: GALGMATVVS AVCICAGASL EPRHAVKLRA NGPPPPSGAA GSILLDMKAV TNSNRPGEVA VEELPSFLMV PPTYLVGSGA SEVSLDVRID RV

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.