Factsheet for HORVU3Hr1G005410.9

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G166800.1	Wheat	plastid	69.24	75.14
TraesCS3D01G017300.1	Wheat	plastid	66.58	74.63
TraesCS3A01G028600.1	Wheat	plastid	68.44	74.28
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	7.59	43.51
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	7.46	42.75
HORVU2Hr1G020530.1	Barley	extracellular	7.32	41.98
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	16.91	40.71
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	55.79	40.13
HORVU1Hr1G023820.1	Barley	extracellular	9.19	37.3
Os01t0122701-00	Rice	plastid	4.79	35.64
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	15.45	35.15
HORVU3Hr1G005290.2	Barley	plastid	16.11	32.35
HORVU4Hr1G069550.1	Barley	plastid	8.12	31.28
HORVU3Hr1G005430.1	Barley	plastid	10.12	30.16
EES00397	Sorghum	plastid	12.65	29.5
HORVU4Hr1G016950.1	Barley	plastid	11.85	29.09
HORVU3Hr1G005470.1	Barley	plastid	11.72	27.67
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	11.32	26.98
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	10.92	22.78
HORVU6Hr1G082920.1	Barley	plastid	11.05	21.67
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	8.39	17.9

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A287K013	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G005410	EnsemblPlants:HORVU3Hr1G005410.9	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI000B472037	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr3H:-:13434513..13438156

Molecular Weight (calculated)

81568.5 Da

IEP (calculated)

7.984

GRAVY (calculated)

-0.091

Length

751 amino acids

Sequence
(BLAST)

001: QLRRSTPLRS SRRTLPEAGT LARRFLPDGG SINREPRLRI RSSSARFPLS LGRSPSRSRT LATQQCLLIP AGAGSGAITI RAYLPRGRAG RGDTAYRCSP
101: HLIPPIIKLL SDEQRGFVEK IGFGSLLSMP GFEMNRALTM WLVDRFSCDA EALEFQAGVS VPVRPLVASV LGIPSGPIQV VPGLDVDDAL YGQYRSVKGK
201: NAKKLAEEML GVTEEEPFCI AFVMAMLAMY LAPNTTLLAN RCLFGAVQRV GSLKEMDWCG FVADFLFKGI RKFKESAAPF VFVKGCVHIL NVIFIDLVKH
301: AAFDVPGGFP RLGFVTTDHN KWVASHPFGS LPVRRLEESV YAPVLNNMGK GSIIERGTRA DSDTNTDPLA NQLAITVTHQ NNQHPVSAGP GTARTTPNIT
401: SLACVEYVEL SSDQSAADSG NTPRVEACTF LEECVVFTRS QQVQSAGPSS EPYSEQITEK MQITPDATLG RNRGSPKDDW RPEKAIVELP NSEQVQRAGE
501: GTIRMNMSLL SCRVCYHPVK PPVFQCNVGH LACGRCLAEL PGEQCHICEH GGGFSPCPVM DDVVLSSKMK CFHDGCQSYV PYHELDDHQR VCPHAPCFCM
601: EPRCGFGGPP PALLGHLTAV HSVPVQKVHY GNIHRLRFSE PRCLLHAEED DGVFLLAVCA LGMASVVSAV CIRAGASPEL RYSIKLRANG PPPPSSAAGS
701: ILLDIKAVTN SRRPGEVAVE ELPSFLMVPP TYLVGSGASK EVSLDIRIDK M

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.