Factsheet for HORVU1Hr1G023820.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 1
extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
TargetP:	secretory
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	54.59	32.48
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	56.22	31.42
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	55.14	31.38
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	52.97	31.31
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	55.14	31.19
HORVU4Hr1G069550.1	Barley	plastid	30.81	29.23
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	46.49	26.06
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	40.0	23.72
HORVU3Hr1G005290.2	Barley	plastid	44.32	21.93
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	41.62	21.39
HORVU3Hr1G005470.1	Barley	plastid	34.05	19.81
EES00397	Sorghum	plastid	33.51	19.25
HORVU3Hr1G005430.1	Barley	plastid	24.86	18.25
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	29.73	17.46
HORVU4Hr1G016950.1	Barley	plastid	26.49	16.01
HORVU6Hr1G082920.1	Barley	plastid	25.95	12.53
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	21.62	11.36
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	7.57	10.69
HORVU2Hr1G020530.1	Barley	extracellular	7.57	10.69
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	7.57	10.69
HORVU3Hr1G005410.9	Barley	mitochondrion	37.3	9.19
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	37.3	6.61
Os01t0122701-00	Rice	plastid	2.7	4.95

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A287EXL1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0046872	EnsemblPlantsGene:HORVU1Hr1G023820	EnsemblPlants:HORVU1Hr1G023820.1	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI000B487FBF	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:105889894..105890552

Molecular Weight (calculated)

20084.2 Da

IEP (calculated)

8.002

GRAVY (calculated)

-0.008

Length

185 amino acids

Sequence
(BLAST)

001: CHMCVLHCPF CTLRLKPPVF HVPCFLSNTP IDSFVETDVS IYRRTRIPVC VQCDKGGHQA CGGCVALLPG GRCRACGGFF VPYSALDAIM SSTKVQWPHA
101: GCQLEVPYHE AADHRSTCLH APCDCTESGC GFVGPPQELA GHLAVLHSVP VHTVQYRRVN WLQVPGRGRS TSTCSSARTM DARSS

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.