Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3B01G079000.1 | Wheat | cytosol, nucleus, plastid | 84.62 | 88.42 |
TraesCS3D01G066100.1 | Wheat | cytosol, nucleus, plastid | 83.69 | 86.9 |
TraesCS3B01G054300.1 | Wheat | nucleus, peroxisome, plastid | 63.69 | 62.92 |
TraesCS3B01G030900.1 | Wheat | cytosol, nucleus, plasma membrane | 61.23 | 61.99 |
TraesCS3B01G028800.1 | Wheat | cytosol, nucleus, peroxisome | 63.38 | 61.86 |
TraesCS3B01G055200.1 | Wheat | nucleus, plasma membrane, plastid | 55.69 | 61.77 |
TraesCS3B01G030800.1 | Wheat | nucleus, plasma membrane, plastid | 55.08 | 61.09 |
TraesCS3B01G054900.1 | Wheat | nucleus, peroxisome, plastid | 61.23 | 60.86 |
TraesCS3B01G054800.1 | Wheat | nucleus, peroxisome, plastid | 61.23 | 60.86 |
TraesCS3B01G055000.1 | Wheat | nucleus, peroxisome, plastid | 60.92 | 60.55 |
TraesCS3B01G054200.1 | Wheat | nucleus, peroxisome, plastid | 61.85 | 60.54 |
TraesCS3B01G028400.1 | Wheat | nucleus, peroxisome, plastid | 62.46 | 60.24 |
TraesCS3B01G055300.1 | Wheat | cytosol, nucleus, peroxisome | 60.31 | 59.94 |
TraesCS3B01G055100.1 | Wheat | cytosol, nucleus, peroxisome | 60.0 | 59.63 |
TraesCS3B01G030700.1 | Wheat | nucleus, peroxisome, plastid | 57.85 | 58.57 |
TraesCS3B01G031000.1 | Wheat | nucleus, plasma membrane, plastid | 58.77 | 58.41 |
TraesCS3B01G031300.1 | Wheat | nucleus, plasma membrane, plastid | 56.62 | 55.59 |
HORVU1Hr1G023820.1 | Barley | extracellular | 31.38 | 55.14 |
TraesCS7B01G030300.1 | Wheat | plastid | 47.69 | 48.14 |
TraesCS3B01G027400.1 | Wheat | nucleus, peroxisome, plastid | 44.92 | 47.1 |
HORVU4Hr1G069550.1 | Barley | plastid | 26.15 | 43.59 |
TraesCS7B01G147600.1 | Wheat | plastid | 28.92 | 41.23 |
TraesCS5B01G187100.1 | Wheat | cytosol, nucleus, plastid | 33.85 | 39.86 |
Os01t0122701-00 | Rice | plastid | 12.31 | 39.6 |
TraesCS4B01G109100.1 | Wheat | cytosol, nucleus, plasma membrane | 33.54 | 39.49 |
EES00397 | Sorghum | plastid | 37.23 | 37.58 |
TraesCS3B01G053300.1 | Wheat | plastid | 22.46 | 35.78 |
HORVU3Hr1G012260.1 | Barley | cytosol, nucleus | 39.38 | 35.56 |
TraesCS7B01G351200.1 | Wheat | cytosol, nucleus, plastid | 32.92 | 34.74 |
TraesCS7B01G040200.1 | Wheat | cytosol | 32.62 | 33.54 |
TraesCS3B01G026900.1 | Wheat | nucleus | 31.38 | 31.88 |
TraesCS3B01G054000.1 | Wheat | cytosol | 30.15 | 31.31 |
TraesCS3B01G027500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 28.62 | 29.62 |
TraesCS3B01G028000.1 | Wheat | mitochondrion | 23.38 | 28.79 |
TraesCS3B01G018200.1 | Wheat | plastid | 38.15 | 28.38 |
TraesCS3B01G027000.1 | Wheat | cytosol, nucleus, plastid | 29.85 | 27.17 |
TraesCS3B01G116800.1 | Wheat | cytosol | 27.08 | 26.67 |
TraesCS3B01G572900.1 | Wheat | cytosol | 28.31 | 25.41 |
TraesCS3B01G573000.1 | Wheat | cytosol | 24.62 | 25.08 |
TraesCS7B01G197600.1 | Wheat | cytosol | 19.08 | 24.41 |
TraesCS6B01G375600.1 | Wheat | plastid | 24.31 | 22.77 |
TraesCS6B01G375700.1 | Wheat | plastid | 23.08 | 21.19 |
TraesCS4B01G105700.1 | Wheat | cytosol, nucleus, peroxisome | 29.54 | 19.55 |
TraesCS3B01G018100.1 | Wheat | nucleus, peroxisome, plasma membrane | 36.92 | 17.65 |
TraesCS3B01G079200.1 | Wheat | cytosol, plastid | 26.77 | 14.65 |
TraesCS1B01G344300.1 | Wheat | nucleus | 37.23 | 14.2 |
Protein Annotations
Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
PANTHER:PTHR10315:SF46 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G079100 | EnsemblPlants:TraesCS3B01G079100.1 |
InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3B:+:50020838..50021909
Molecular Weight (calculated)
33562.5 Da
IEP (calculated)
7.026
GRAVY (calculated)
0.085
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGAGAEGGN RGSPSTMEKA DESAKKARLE LPNGHVKQEV GVQHAVGGDD GGAIVPAEAG HGSRVELAVK IDMSVLHCPL CTLPFKPPVL QCNKGGHLAC
101: GGCVALLPGG QCRACEDGGG FFSPCPALDA IVSSTKIVCP NAGCQTYVPY HEAADHRSAC PHAPCHCTEP GCGFVGAPQA LAGHLVDLHS VPVRTVQYGR
201: VSQVPVSGRR QLLVAEEDGR SFLLTVGALG AAAAAVSVVC VRASASTQPR FSCKMWVNLV QPASGGRADM VLVDIQMRSS ATPGAVVAVD EPTFLAVPRM
301: YMVPVDGDAA SMEVPLNIRV DKISR
101: GGCVALLPGG QCRACEDGGG FFSPCPALDA IVSSTKIVCP NAGCQTYVPY HEAADHRSAC PHAPCHCTEP GCGFVGAPQA LAGHLVDLHS VPVRTVQYGR
201: VSQVPVSGRR QLLVAEEDGR SFLLTVGALG AAAAAVSVVC VRASASTQPR FSCKMWVNLV QPASGGRADM VLVDIQMRSS ATPGAVVAVD EPTFLAVPRM
301: YMVPVDGDAA SMEVPLNIRV DKISR
001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.