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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • plastid 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, peroxisome, plastid
Any Predictor:nucleus, peroxisome, plastid
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCSU01G046200.1 Wheat nucleus, plasma membrane, plastid 93.87 96.04
TraesCS3D01G016900.1 Wheat nucleus, plasma membrane, plastid 90.97 94.0
TraesCS7D01G071700.1 Wheat cytosol, plasma membrane, plastid 38.06 88.06
TraesCS5A01G435500.1 Wheat cytosol, nucleus, plastid 56.13 58.78
TraesCS7B01G030300.1 Wheat plastid 59.03 56.83
TraesCS5B01G187100.1 Wheat cytosol, nucleus, plastid 49.35 55.43
TraesCS4B01G109100.1 Wheat cytosol, nucleus, plasma membrane 48.71 54.71
HORVU3Hr1G005470.1 Barley plastid 54.19 52.83
TraesCS3B01G079000.1 Wheat cytosol, nucleus, plastid 47.74 47.59
TraesCS3B01G079100.1 Wheat cytosol, endoplasmic reticulum, nucleus 47.1 44.92
TraesCS3B01G055200.1 Wheat nucleus, plasma membrane, plastid 41.61 44.03
TraesCS3B01G030800.1 Wheat nucleus, plasma membrane, plastid 40.32 42.66
TraesCS3B01G054200.1 Wheat nucleus, peroxisome, plastid 45.16 42.17
TraesCS7B01G147600.1 Wheat plastid 30.65 41.67
TraesCS3B01G028400.1 Wheat nucleus, peroxisome, plastid 45.16 41.54
TraesCS3B01G054300.1 Wheat nucleus, peroxisome, plastid 43.55 41.03
TraesCS3B01G055100.1 Wheat cytosol, nucleus, peroxisome 42.58 40.37
TraesCS3B01G028800.1 Wheat cytosol, nucleus, peroxisome 43.23 40.24
TraesCS3B01G054800.1 Wheat nucleus, peroxisome, plastid 42.26 40.06
TraesCS3B01G030900.1 Wheat cytosol, nucleus, plasma membrane 41.29 39.88
TraesCS3B01G054900.1 Wheat nucleus, peroxisome, plastid 41.61 39.45
TraesCS3B01G055000.1 Wheat nucleus, peroxisome, plastid 41.61 39.45
TraesCS3B01G055300.1 Wheat cytosol, nucleus, peroxisome 41.61 39.45
TraesCS3B01G031000.1 Wheat nucleus, plasma membrane, plastid 40.97 38.84
TraesCS3B01G030700.1 Wheat nucleus, peroxisome, plastid 39.68 38.32
TraesCS3B01G031300.1 Wheat nucleus, plasma membrane, plastid 40.32 37.76
Os01t0122701-00 Rice plastid 11.29 34.65
EES00397 Sorghum plastid 35.81 34.47
TraesCS3B01G053300.1 Wheat plastid 21.29 32.35
TraesCS7B01G351200.1 Wheat cytosol, nucleus, plastid 30.32 30.52
TraesCS3B01G054000.1 Wheat cytosol 29.68 29.39
TraesCS3B01G028000.1 Wheat mitochondrion 24.84 29.17
TraesCS7B01G040200.1 Wheat cytosol 29.35 28.8
TraesCS3B01G018200.1 Wheat plastid 37.74 26.77
TraesCS3B01G027500.1 Wheat cytosol, endoplasmic reticulum, nucleus 26.77 26.43
TraesCS3B01G026900.1 Wheat nucleus 26.45 25.62
TraesCS3B01G572900.1 Wheat cytosol 28.06 24.03
TraesCS3B01G027000.1 Wheat cytosol, nucleus, plastid 27.42 23.81
TraesCS7B01G197600.1 Wheat cytosol 19.35 23.62
TraesCS3B01G573000.1 Wheat cytosol 23.55 22.88
TraesCS6B01G375600.1 Wheat plastid 24.84 22.19
TraesCS3B01G116800.1 Wheat cytosol 22.9 21.52
TraesCS3B01G018100.1 Wheat nucleus, peroxisome, plasma membrane 40.0 18.24
TraesCS4B01G105700.1 Wheat cytosol, nucleus, peroxisome 28.06 17.72
TraesCS6B01G375700.1 Wheat plastid 19.35 16.95
TraesCS1B01G344300.1 Wheat nucleus 42.26 15.38
TraesCS3B01G079200.1 Wheat cytosol, plastid 26.45 13.8
Protein Annotations
Gene3D:3.30.40.10MapMan:35.1GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006511GO:GO:0007275GO:GO:0008150
GO:GO:0008152GO:GO:0008270GO:GO:0009056GO:GO:0009987GO:GO:0019538InterPro:IPR008974
InterPro:IPR013010InterPro:IPR013083PFscan:PS51081PANTHER:PTHR10315PANTHER:PTHR10315:SF46InterPro:SINA-like
SUPFAM:SSF49599InterPro:TRAF-likeEnsemblPlantsGene:TraesCS3B01G027400EnsemblPlants:TraesCS3B01G027400.1InterPro:Znf_RING/FYVE/PHDInterPro:Znf_SIAH
SEG:seg:::::
Description
No Description!
Coordinates
chr3B:+:11924405..11925467
Molecular Weight (calculated)
32741.5 Da
IEP (calculated)
8.079
GRAVY (calculated)
-0.085
Length
310 amino acids
Sequence
(BLAST)
001: MRTQAASSAM EMELPNLNVP VKQEIVVHTA GAQGRGGGGG AIAEASEHGT RRTEPTVRIE ANMLDCPICS SPFKPPVFQC KGGHLACGSC VAKLPWKQCQ
101: RCDHGGDFHG CPFVDAFVSS ARMKCDHHGC GRQVTYHKLD DHKSACPLAP CKCPVSGCGF EGPPPALRHH LSAVHSMPVH AVQYGKVLQL EVPVSEPRRL
201: LFAEEDGRAF LVVGGSLGLG VPIALSVVCI RAGASPPPHY VAKVWANGPP AAANDRTDTV RADIQVTSSK EPGAVAVEEL TFLTVPHKLL AGAGPSRAVS
301: LHLRIDKITS
Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.